Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1800
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0653 - 18429736-18431379 30 1.5
05_05_0021 + 21574563-21574650,21575094-21575220,21575254-215753... 29 4.7
11_04_0212 - 14919074-14919433,14919444-14920514 28 6.2
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 28 6.2
04_04_0742 + 27706150-27706198,27706306-27706376,27706490-277065... 28 6.2
05_04_0278 - 19694590-19694757,19696331-19696391,19696503-196966... 28 8.3
04_04_1555 + 34376612-34376887,34377306-34377450,34377891-343780... 28 8.3
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298... 28 8.3
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 28 8.3
>04_03_0653 - 18429736-18431379
Length = 547
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/88 (26%), Positives = 33/88 (37%)
Frame = +3
Query: 192 RRSARIVKGFPDCSRGFCEPRGRSGTDADREKRVPVPQMGAFVLWHTQGALVQRDALLGG 371
R R ++GF DC F EPR R R+ F + G + A+ G
Sbjct: 112 RCERRAIRGFADCVSAFMEPRVAVAPRRARSLRL------EFFAARSTGFVEDLIAMAVG 165
Query: 372 TSG*NDTDVRVMPSRIPNGGPGWRVSLP 455
G D D+ V+ + GP + P
Sbjct: 166 AWGVEDLDITVVKPALVEQGPCYAFCFP 193
>05_05_0021 +
21574563-21574650,21575094-21575220,21575254-21575372,
21575687-21575769,21575902-21576129,21576697-21576744,
21576831-21576890,21576978-21577116,21577303-21577574,
21577683-21577922,21577983-21577991
Length = 470
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 326 PKYKGSHLWYGYSLLAISIGSRTSAGFAEATTAVRETFDNASRPSD 189
P + SHL YS + S+GS T + A+ T + E AS SD
Sbjct: 127 PSWPMSHLQEPYSQNSQSVGSTTDSSSAQNTMSQAELVSPASMRSD 172
>11_04_0212 - 14919074-14919433,14919444-14920514
Length = 476
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 475 EFGKPQLGRETLHPGPPFGILEGITLTSVSFYPDVPPKRASRCTKAPCVCQSTKAPICG- 299
E GKP L + P PP G LE T +S +PD AS ++ + + + G
Sbjct: 254 EHGKPVLVTGPIVPEPPRGELEERWATWLSSFPDNSVVFASFGSETFLLHAAATELLLGL 313
Query: 298 --TGTLFSRSASVPE 260
TG RSA +P+
Sbjct: 314 EATGPAVPRSAQLPQ 328
>11_01_0533 +
4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 480 GMSSGNRSLAEKPSIQDHHSVFLK-A*L*HLCHFILTSLPREHLAVPRLLVCAKVQR 313
G GNR ++ + D S A L H +TSLP + + RLL AK ++
Sbjct: 82 GKKRGNRDRSDLAEVDDPESAMSTVAQLLEQLHTSMTSLPEKEVTTKRLLELAKEKK 138
>04_04_0742 +
27706150-27706198,27706306-27706376,27706490-27706571,
27706695-27706810,27706899-27707075,27707148-27707195,
27707786-27707863,27708724-27708837
Length = 244
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1
Query: 115 ERRGNTAEQRHISSHGSGEPSNVFPSEGLLALSKVSRTAVVASANPADVLEPMLIARREY 294
E + + Q + SHG + ++VF + + L+ S V +SA V E ML+A REY
Sbjct: 139 EEEEDASPQSEVMSHGV-KMTSVFDAVTVSTLTDRSADKV-SSAEGVSV-ESMLVAEREY 195
Query: 295 P 297
P
Sbjct: 196 P 196
>05_04_0278 -
19694590-19694757,19696331-19696391,19696503-19696658,
19696740-19696912,19698199-19698276,19698399-19698575,
19698924-19699001,19700573-19700692,19700803-19701183
Length = 463
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 263 WNR-C*SREESTRTTDGSLCTLAHTRSLGTARC--SLGRDVRIK 385
W+R C S EE G L + H S G RC S G+D IK
Sbjct: 280 WDRRCLSTEEPAGVLTGHLHGITHIDSRGDGRCFISNGKDQAIK 323
>04_04_1555 +
34376612-34376887,34377306-34377450,34377891-34378000,
34378121-34378418,34378591-34379006
Length = 414
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 312 LPSVVRVLSSRDQHRFQNVRGVRRS 238
+ SV ++L +RDQH +N+R R++
Sbjct: 134 ITSVTKMLDNRDQHTLENLRAERQA 158
>03_02_0658 +
10228794-10228943,10229042-10229105,10229510-10229805,
10230689-10230904,10231409-10231549,10232407-10232499,
10234010-10234108,10234198-10234227,10234274-10234360,
10234636-10234689,10234758-10234835,10235128-10235202,
10236265-10236356,10236433-10236490,10236590-10236664,
10236966-10237013,10239003-10239065,10239167-10239258,
10239693-10239761,10239867-10239930,10240007-10240072,
10240170-10240271
Length = 703
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 261 SGTDADREKRV-PVPQMGAFVLWHTQGALVQRDALLGGTSG*NDT 392
SG + D EK V P P MG+ V++ R L G S NDT
Sbjct: 175 SGLELDLEKYVVPTPNMGSDVVYAANLTENPRSLLTTGISSNNDT 219
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/81 (30%), Positives = 33/81 (40%)
Frame = +2
Query: 122 EEIPRNKDTLVRMVAANRAMYFHQKVCSHCQRFPGLQSWLLRTPRTFWNRC*SREESTRT 301
E P KDT++R + ++ V + +R G WL R W C + T
Sbjct: 499 EVSPAVKDTVLRSLMSSYGRSSRGSVSAAERRVGGKVDWLWYGSRKSW-ACDDGDGCVST 557
Query: 302 TDGSLCTLAHTRSLGTARCSL 364
TD L TR L RCSL
Sbjct: 558 TDIILAWHVATR-LYEMRCSL 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,003,765
Number of Sequences: 37544
Number of extensions: 493910
Number of successful extensions: 1469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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