Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1800
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-6|CAE17756.1|  412|Caenorhabditis elegans Hypothetical pr...    31   0.60 
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z93389-10|CAB07674.1|  417|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z93379-11|CAB07595.1|  417|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z83234-3|CAE17873.1|  116|Caenorhabditis elegans Hypothetical pr...    28   5.6  
DQ340629-1|ABC65817.1|  116|Caenorhabditis elegans chondroitin p...    28   5.6  
Z78546-6|CAB54307.1|  642|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z78545-5|CAB01764.2|  642|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    27   9.8  
AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z81054-6|CAE17756.1|  412|Caenorhabditis elegans Hypothetical
           protein F01D4.9 protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 80  KTIFVVPLFEVERGEEIPRNKDTLVRMVAANRAMYFHQKVCSHCQRFPGLQSW 238
           K + V+  FEV+    +P +   L  M+ A RA  FH K          L  W
Sbjct: 241 KKLLVIRRFEVDNKAHVPADNKELFLMIKAFRAFEFHHKYFPAGHTIESLWQW 293


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 490 IVWWNEFGKPQLGRETLHPGPPFGILEGITLTSVSFYPDVPPKRASRCTKAPCVCQSTKA 311
           I+ + +F    + + TL P     + + IT   +S  P       +   +A C+  S  +
Sbjct: 396 IMQFGQFISHDMAKTTLVPSSKCNVCQNITSRCMSV-PITFDDSNANFRQAQCIRVSRSS 454

Query: 310 PICGTGTLFSR 278
           PICG+G L  R
Sbjct: 455 PICGSGNLKPR 465


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 490 IVWWNEFGKPQLGRETLHPGPPFGILEGITLTSVSFYPDVPPKRASRCTKAPCVCQSTKA 311
           I+ + +F    + + TL P     + + IT   +S  P       +   +A C+  S  +
Sbjct: 537 IMQFGQFISHDMAKTTLVPSSKCNVCQNITSRCMSV-PITFDDSNANFRQAQCIRVSRSS 595

Query: 310 PICGTGTLFSR 278
           PICG+G L  R
Sbjct: 596 PICGSGNLKPR 606


>Z93389-10|CAB07674.1|  417|Caenorhabditis elegans Hypothetical
           protein F21H7.10 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +2

Query: 80  KTIFVVPLFEVERGEEIPRNKDTLVRMVAANRAMYFHQKVCSHCQRFPGLQSW 238
           K +  +  FE     EIPR+   L++    ++   FH +         GL  W
Sbjct: 244 KRVLAIRRFETSDTAEIPRDHLKLLKSKKLHKTFEFHHRYFPEGHHIDGLDDW 296


>Z93379-11|CAB07595.1|  417|Caenorhabditis elegans Hypothetical
           protein F21H7.10 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +2

Query: 80  KTIFVVPLFEVERGEEIPRNKDTLVRMVAANRAMYFHQKVCSHCQRFPGLQSW 238
           K +  +  FE     EIPR+   L++    ++   FH +         GL  W
Sbjct: 244 KRVLAIRRFETSDTAEIPRDHLKLLKSKKLHKTFEFHHRYFPEGHHIDGLDDW 296


>Z83234-3|CAE17873.1|  116|Caenorhabditis elegans Hypothetical
           protein K09E4.6 protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/51 (43%), Positives = 24/51 (47%)
 Frame = +1

Query: 109 SGERRGNTAEQRHISSHGSGEPSNVFPSEGLLALSKVSRTAVVASANPADV 261
           SGE  G+  E    S  GSGE S     E     S  S  AVVAS +P DV
Sbjct: 55  SGESSGDK-EAVEASGEGSGEGSGDATLESSGEGSGESHNAVVASDSPKDV 104


>DQ340629-1|ABC65817.1|  116|Caenorhabditis elegans chondroitin
           proteoglycan-7 protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/51 (43%), Positives = 24/51 (47%)
 Frame = +1

Query: 109 SGERRGNTAEQRHISSHGSGEPSNVFPSEGLLALSKVSRTAVVASANPADV 261
           SGE  G+  E    S  GSGE S     E     S  S  AVVAS +P DV
Sbjct: 55  SGESSGDK-EAVEASGEGSGEGSGDATLESSGEGSGESHNAVVASDSPKDV 104


>Z78546-6|CAB54307.1|  642|Caenorhabditis elegans Hypothetical
           protein M03B6.3 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 484 WWNEFGKPQLGRETLHPGPPFGILEGITLTSVSFYPDVPPKRASRCTKAPCVCQSTKAP 308
           W + FG  Q       P PP  +   + L ++  YP  PP   ++ T AP V ++T  P
Sbjct: 344 WHSSFGPNQ-------PRPPAPLPTDLQLENLG-YPPSPPAPLAQPTPAPAVSENTDEP 394


>Z78545-5|CAB01764.2|  642|Caenorhabditis elegans Hypothetical
           protein M03B6.3 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 484 WWNEFGKPQLGRETLHPGPPFGILEGITLTSVSFYPDVPPKRASRCTKAPCVCQSTKAP 308
           W + FG  Q       P PP  +   + L ++  YP  PP   ++ T AP V ++T  P
Sbjct: 344 WHSSFGPNQ-------PRPPAPLPTDLQLENLG-YPPSPPAPLAQPTPAPAVSENTDEP 394


>AL031620-4|CAA20925.1|  456|Caenorhabditis elegans Hypothetical
           protein C18B12.4 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 291 VPVPQMGAFVLWHTQGALVQRDALLGGTS 377
           +PVPQ     LW +Q ALV +D +L  T+
Sbjct: 330 LPVPQGQMVDLWSSQEALVDQDIVLHNTT 358


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 292 TLFSRSASVPERPRGSQKPRLQSGKP 215
           T F +++  PE PR  + PR   G+P
Sbjct: 4   TTFDKNSGAPEEPRRPRGPRTPDGEP 29


>AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.4 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 349 SEMLSWEGRQDKMTQMLELCLQEYRMVVLDGGFLCQAAVSRTHSTRQSRAERL 507
           S M+S E  ++K    LE+  +    +    G   +   SR HS RQ + ER+
Sbjct: 325 SRMMSPEFTKEKKCAKLEIDTESEDEIEYSNGHSHRGTSSRLHSPRQVKKERM 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,329
Number of Sequences: 27780
Number of extensions: 403759
Number of successful extensions: 1293
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)