Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1800
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.70 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.70 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 304 RWEPLYFGTHKEPWYSEMLSW 366
           ++ P+ + T++ PW+S +L W
Sbjct: 513 KFVPVKYLTYEYPWWSHVLGW 533


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 304 RWEPLYFGTHKEPWYSEMLSW 366
           ++ P+ + T++ PW+S +L W
Sbjct: 566 KFVPVKYLTYEYPWWSHVLGW 586


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 186 SIRRSARIVKGFPDCSRGFCEPRG 257
           ++R +++I +GF D  +  CE RG
Sbjct: 751 AVRTASQIPQGFKDLVQKKCEERG 774


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 432 PGWRVSLPSCGFPNSFHQTIAR*ETNSERYMKI 530
           PG   S PS   P+SF  +++     SE Y  I
Sbjct: 84  PGGGSSSPSPSSPSSFFSSVSPTSLGSENYTGI 116


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 142 FVPRYFLASLHFKQWHHKDRLSEHTA 65
           F+ ++ L     +Q HH+D  SEH +
Sbjct: 91  FMQQHSLYLQQQQQQHHQDSSSEHAS 116


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -2

Query: 361  RASRCTKAPCVCQSTKAPICGTGTLFSRSASVPERP 254
            R SR T  P + Q +       G   S    VPERP
Sbjct: 1334 RNSRRTPVPRLAQDSSEDESYRGPSASGGRPVPERP 1369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,024
Number of Sequences: 438
Number of extensions: 5444
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)