Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1799
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 52 1e-07
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 45 1e-05
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 42 9e-05
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 40 5e-04
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 36 0.005
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 33 0.032
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 30 0.30
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 30 0.30
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 28 1.6
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 28 1.6
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.8
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 26 6.4
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 8.5
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 8.5
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 51.6 bits (118), Expect = 1e-07
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 643 PTWVHEIFQGTLTSETRCLNCETVSSKD 726
P WVH +F+GTLTSET+CL CE ++S+D
Sbjct: 227 PKWVHSLFEGTLTSETKCLTCENITSRD 254
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +2
Query: 359 KETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQXAH 508
KE + TCL DL+ S++ + G +P++FI LR++ E F + QQ AH
Sbjct: 151 KENIYTCLKDLYCSVSCCDCRYGICSPERFIQVLRRDNEAFRSTQQQDAH 200
Score = 39.1 bits (87), Expect = 6e-04
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +2
Query: 242 FRISHFGNTCYSNSVLQALYFCRPFREKVLEY 337
+ ++++GNTCY +SVL +LY +PFR+ + Y
Sbjct: 41 YGLTNYGNTCYVSSVLVSLYHLKPFRDSLNSY 72
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGS 430
G TCY NS+LQ+L+F FR+ V + N +++++ L +FY++ Q++ V +
Sbjct: 236 GATCYMNSLLQSLFFTNIFRKTVYKIPTDNDDSRDSVAYALQRVFYNLEKQREPVST 292
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 41.9 bits (94), Expect = 9e-05
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC---LADLFYSI--ATQ 412
+S+ GNTCY NS LQ L R R+ + KN+ + L +A +F S+ +
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQVASIFASLIKSLY 372
Query: 413 KKKVGSIAPKKFIARLRKEKEEFDNYMQQ 499
+ S AP++F A + K F Y QQ
Sbjct: 373 SPEHSSFAPRQFKATIGKFNHSFLGYGQQ 401
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGS 430
G TCY NS+LQ+LY FR V + + + K+++ L FY++ + V +
Sbjct: 219 GATCYMNSLLQSLYIIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNEPVST 275
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 36.3 bits (80), Expect = 0.005
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPFREKVLEYKA--KNKRTKETLLT--CLADLFYSIATQ- 412
+++ GNTCY N VLQ L+ C+ +L+ + +N TK L T + F+S+
Sbjct: 74 LTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSV 133
Query: 413 --KKKVGSIAPKKFIARLRKEKEEF 481
SI+P+ F+ ++ +F
Sbjct: 134 LLNHGQRSISPRNFLEIVQSLNRDF 158
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 33.5 bits (73), Expect = 0.032
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPF 316
GN C+ NS+LQAL +C PF
Sbjct: 139 GNICFMNSILQALMYCVPF 157
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 30.3 bits (65), Expect = 0.30
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPFREKVLE 334
+ + GN CY NS++Q + +P R +L+
Sbjct: 616 LENTGNLCYLNSLIQYYFIIKPLRNAILD 644
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.30
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 HFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQK---KKV 424
+ GNTC+ NSVLQ + P + +L + + C + + A K+
Sbjct: 129 NLGNTCFMNSVLQLMTQTPPLVQYLLSGQHSLSCRMNACVLCRMEQHVARAYPNKGTKRA 188
Query: 425 GSIAPKKFIARLRKEKEEFDNYMQQXAH 508
+ P + L+ F Y Q+ AH
Sbjct: 189 SAFKPSGIQSMLKVISSHFRPYRQEDAH 216
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/76 (22%), Positives = 31/76 (40%)
Frame = +2
Query: 254 HFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKVGSI 433
+ GNTCY NS +Q L + V ++ + E + ++ + +
Sbjct: 104 NLGNTCYMNSTVQMLRAIPELSDAVSQFNSSGGLVAE---------YRTLLNSMQSNAPV 154
Query: 434 APKKFIARLRKEKEEF 481
P +F+ LR E +F
Sbjct: 155 TPMRFLQSLRMEYPQF 170
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 136 DICNSVLTTYQTNTRFSPPNEGV*NFSTVISRNIIN 29
+I N VL+ Y+T PPN G + I+RN+I+
Sbjct: 590 NIQNHVLSCYKTLFFEPPPNSGTNEAANYIARNLIS 625
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 259 WQHLLQQLSVASFIFLSPIQRESIRVQS*E*KDQGNSINMPGRFIL*HSYSKEKSWINC 435
W++ L QLS+ S I LSP IR + +S+ ++ ++ EKS +NC
Sbjct: 358 WRNPLPQLSIISHIILSPTSMFDIREFNVNPVVSVDSLKDYSEELVNYAKIYEKSNLNC 416
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 335 YKAKNKRTKETLLTCLADLFYSI--ATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQ 499
Y K+ +K TL+ + +I +Q KK+G P ++ K EFD+ + Q
Sbjct: 299 YGFKSSDSKATLIKIVESCLDAIDSRSQSKKLGKETPHDYLITSTKTVLEFDDIVTQ 355
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 652 VHEIFQGTLTSETRCLNCE 708
+H IF G+L + CL+C+
Sbjct: 261 IHRIFSGSLKNVVTCLDCK 279
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 259 WQHLLQQLSVASFIFLSPIQ 318
W H+ QQ+ + SF L+P Q
Sbjct: 347 WDHITQQIGMFSFTGLTPAQ 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,268
Number of Sequences: 5004
Number of extensions: 59434
Number of successful extensions: 147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -