Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1799
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 133 1e-31
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 109 2e-24
Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical ... 39 0.003
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 33 0.28
Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 33 0.28
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 33 0.28
AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical ... 31 0.64
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 31 1.1
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis... 29 2.6
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 29 3.4
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 29 3.4
AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical ... 29 3.4
AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical ... 29 3.4
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 29 4.5
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 29 4.5
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 7.9
U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 133 bits (321), Expect = 1e-31
Identities = 60/92 (65%), Positives = 77/92 (83%), Gaps = 3/92 (3%)
Frame = +2
Query: 242 FRISHFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRT---KETLLTCLADLFYSIATQ 412
+ + +FGNTCY NSV+QAL+FCRPFREKVL YK K++ K+ L+TCLADLF+SIA+Q
Sbjct: 27 YGLVNFGNTCYCNSVIQALFFCRPFREKVLNYKQTLKKSGASKDNLVTCLADLFHSIASQ 86
Query: 413 KKKVGSIAPKKFIARLRKEKEEFDNYMQQXAH 508
K++VG+IAPK+FI +L+KE E FDNYMQQ AH
Sbjct: 87 KRRVGTIAPKRFITKLKKENELFDNYMQQDAH 118
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +1
Query: 586 KNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKD 726
+ N G V N + + TW+HEIFQG LT+ETRCL+CETVSSKD
Sbjct: 175 ERNGGITVEGNEFLNKSDTTTWIHEIFQGILTNETRCLSCETVSSKD 221
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 109 bits (262), Expect = 2e-24
Identities = 50/78 (64%), Positives = 65/78 (83%), Gaps = 3/78 (3%)
Frame = +2
Query: 284 VLQALYFCRPFREKVLEYKAKNKRT---KETLLTCLADLFYSIATQKKKVGSIAPKKFIA 454
++ AL+FCRPFREKVL YK K++ K+ L+TCLADLF+SIA+QK++VG+IAPK+FI
Sbjct: 29 LVNALFFCRPFREKVLNYKQTLKKSGASKDNLVTCLADLFHSIASQKRRVGTIAPKRFIT 88
Query: 455 RLRKEKEEFDNYMQQXAH 508
+L+KE E FDNYMQQ AH
Sbjct: 89 KLKKENELFDNYMQQDAH 106
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/47 (57%), Positives = 33/47 (70%)
Frame = +1
Query: 586 KNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKD 726
+ N G V N + + TW+HEIFQG LT+ETRCL+CETVSSKD
Sbjct: 163 ERNGGITVEGNEFLNKSDTTTWIHEIFQGILTNETRCLSCETVSSKD 209
>Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical
protein K09A9.4 protein.
Length = 716
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 233 RTLFRISHFGNTCYSNSVLQALYFCRPFREKVLE 334
R L +FGNTCY N+VLQ L C PF + ++E
Sbjct: 179 RGLLGYLNFGNTCYMNAVLQLLGHCSPFTQYLIE 212
>AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical
protein H34C03.2 protein.
Length = 900
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV- 424
+S+ GNTC+ S Q L P RE L +N ++ L L ++ K +
Sbjct: 277 LSNLGNTCFMASAFQCLSNMPPLREYFLANTYQNDINEDNPLGTHGHLAMAVGELMKGMW 336
Query: 425 ----GSIAPKKFIARLRKEKEEFDNYMQQXAH 508
SI P+KF + + + F+ Y QQ AH
Sbjct: 337 SGDYASINPRKFKSIIGQFAPRFNGYSQQDAH 368
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 424
G TCY NS+LQ+ YF FR V + + ++ + +FY + + V
Sbjct: 199 GATCYMNSILQSFYFTTGFRRAVYNMDVGTEPNESNIVLAMQRVFYELQMASEAV 253
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 424
G TCY NS+LQ+ YF FR V + + ++ + +FY + + V
Sbjct: 199 GATCYMNSILQSFYFTTGFRRAVYNMDVGTEPNESNIVLAMQRVFYELQMASEAV 253
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 424
G TCY NS+LQ+ YF FR V + + ++ + +FY + + V
Sbjct: 199 GATCYMNSILQSFYFTTGFRRAVYNMDVGTEPNESNIVLAMQRVFYELQMASEAV 253
>Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical
protein C05A9.3 protein.
Length = 388
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 562 NQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSK 723
N ST +K SG N G + N P V ++ T T C+NC+T S+K
Sbjct: 14 NFSTTSFRKKLSGLNANITGFIDGNNRPVPVW-VYDRIGTYRTICINCQTSSTK 66
>Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 32.7 bits (71), Expect = 0.28
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKE---TLLTCLADLFYSIATQKK 418
+++ GNTCY NS +Q L + E VL+ A+ R +E L LA LF S+ + +
Sbjct: 104 LANLGNTCYFNSCVQML---KEVNELVLK-PAEEMRIREHNDRLCHNLATLFNSLRDKDR 159
Query: 419 KVGS----IAPKKFIARLRKEKEEFDNYMQQXAH 508
+ S I P I L +F+ + QQ A+
Sbjct: 160 ALRSKGEPIKPFAAILTLSDSFPQFEKFKQQDAN 193
>Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 32.7 bits (71), Expect = 0.28
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKE---TLLTCLADLFYSIATQKK 418
+++ GNTCY NS +Q L + E VL+ A+ R +E L LA LF S+ + +
Sbjct: 104 LANLGNTCYFNSCVQML---KEVNELVLK-PAEEMRIREHNDRLCHNLATLFNSLRDKDR 159
Query: 419 KVGS----IAPKKFIARLRKEKEEFDNYMQQXAH 508
+ S I P I L +F+ + QQ A+
Sbjct: 160 ALRSKGEPIKPFAAILTLSDSFPQFEKFKQQDAN 193
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 32.7 bits (71), Expect = 0.28
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKE---TLLTCLADLFYSIATQKK 418
+++ GNTCY NS +Q L + E VL+ A+ R +E L LA LF S+ + +
Sbjct: 104 LANLGNTCYFNSCVQML---KEVNELVLK-PAEEMRIREHNDRLCHNLATLFNSLRDKDR 159
Query: 419 KVGS----IAPKKFIARLRKEKEEFDNYMQQXAH 508
+ S I P I L +F+ + QQ A+
Sbjct: 160 ALRSKGEPIKPFAAILTLSDSFPQFEKFKQQDAN 193
>AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical
protein Y71A12B.9 protein.
Length = 699
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPFREKVL 331
GNTC+ N+VLQAL FRE ++
Sbjct: 384 GNTCFMNAVLQALASISEFREYIM 407
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPFREKVL--EYKAKNKRT-----KETLLTCLADLFYSIA 406
+ + GNTC+ N+VLQ L RE L Y+ + T + L AD + +
Sbjct: 425 LRNIGNTCFMNAVLQMLVNNIELREYFLRNHYQPEINETNPLGSEGRLAKAFADFMHQMW 484
Query: 407 TQKKKVGSIAPKKFIARLRKEKEEFDNYMQQXAH 508
+ +K +I P + + ++ +F N+ Q AH
Sbjct: 485 SGHQK--AIEPTQIKNIVAEKASQFANFAQHDAH 516
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 245 RISHFGNTCYSNSVLQALYFCRP 313
R+ + GN+CY NS LQA+ C P
Sbjct: 35 RLVNTGNSCYYNSTLQAMSSCGP 57
>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
transmembrane conductanceregulator homolog protein 1
protein.
Length = 1247
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 229 LTNIISD*SFWQHLLQQLSVASFIFLSPIQRESI 330
LTN+ + +QH+ + IFLSP +ES+
Sbjct: 758 LTNVQTSRKLYQHITSAIFAVPMIFLSPTNKESL 791
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPFREKVLEYKAKN--------KRTKETLLTCLADLFYSIAT 409
GN CY NS LQ + FR+ + +++ + + + L D+FY++ T
Sbjct: 114 GNFCYVNSFLQVWFNVPEFRQLIYDFRPSENFVPPEAPRMNVQATMLALQDIFYTLQT 171
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRPFREKVLEYKAKN--------KRTKETLLTCLADLFYSIAT 409
GN CY NS LQ + FR+ + +++ + + + L D+FY++ T
Sbjct: 114 GNFCYVNSFLQVWFNVPEFRQLIYDFRPSENFVPPEAPRMNVQATMLALQDIFYTLQT 171
>AF026212-1|AAF99971.1| 807|Caenorhabditis elegans Hypothetical
protein F52G3.3 protein.
Length = 807
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 239 LFRISHFGN-TCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQK 415
LF + FG C+ N++L L+ REK +E+ +++ KE L + +F
Sbjct: 564 LFLDNSFGQQNCFMNALLNMLFVSATIREKFVEF---HQQRKEKLSAEVGRIFRGNVKSV 620
Query: 416 KKVGSIAPKK 445
K++ + P +
Sbjct: 621 KRLRHLLPNR 630
>AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical
protein Y67D2.2 protein.
Length = 474
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 248 ISHFGNTCYSNSVLQALYFCRPF 316
+++ GNTCY N++LQ L C F
Sbjct: 47 LANQGNTCYMNALLQGLASCPSF 69
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRP 313
GN+CY NS +QA+ C P
Sbjct: 220 GNSCYYNSTMQAVSSCNP 237
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 245 RISHFGNTCYSNSVLQALYFC 307
R+ + GN+CY NS +QAL C
Sbjct: 283 RLYNTGNSCYFNSTMQALSSC 303
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 260 GNTCYSNSVLQALYFCRP 313
GN+CY NS +QA+ C P
Sbjct: 220 GNSCYYNSTMQAVSSCNP 237
>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
protein T05H10.1 protein.
Length = 1326
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 266 TCYSNSVLQALYFCRPFREKVLEYK 340
TCY NS++Q+LY FR + +++
Sbjct: 96 TCYLNSLVQSLYMTPEFRNAMYDWE 120
>U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical
protein C04E6.5 protein.
Length = 515
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 245 RISHFGNTCYSNSVLQALYFCRPF 316
++ + GN+C+ NS +QAL C F
Sbjct: 146 KLVNTGNSCFLNSTMQALSSCHSF 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,533
Number of Sequences: 27780
Number of extensions: 330215
Number of successful extensions: 814
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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