Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1799
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.0  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   3.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.2  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   5.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.9  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 652 PKSVQCCEALNHYTSHSH 599
           PK+    +  NHYTSH H
Sbjct: 111 PKNQYKNQNNNHYTSHQH 128


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 AKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQXAHN 511
           +KN +T+E  L         +     K+ S  P     R  + K+E  +Y+++  +N
Sbjct: 55  SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN 111


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 AKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQXAHN 511
           +KN +T+E  L         +     K+ S  P     R  + K+E  +Y+++  +N
Sbjct: 71  SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN 127


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +2

Query: 341 AKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQXAHN 511
           +KN +T+E  L         +     K+ S  P     R  + K+E  +Y+++  +N
Sbjct: 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYN 184


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +2

Query: 341 AKNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDNYMQQXAHNS 514
           +KN +T+E  L         +     K+    P    AR  + K+E  +Y+++  +N+
Sbjct: 128 SKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNT 185


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 545 ISLI*FIRKFRNYGXLVAC 489
           I LI     FRNYG  +AC
Sbjct: 56  IKLINEEENFRNYGCFLAC 74


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 317 REKVLEYKAKNKRTKET 367
           REK++E K KNK    T
Sbjct: 460 REKIIEEKRKNKNKNLT 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,827
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)