Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1794
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 48 2e-06
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 46 5e-06
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 33 0.037
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 0.79
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 28 1.4
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 28 1.8
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 3.2
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 27 4.2
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 26 5.6
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 7.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 7.4
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 26 7.4
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 9.8
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 48.0 bits (109), Expect = 2e-06
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 92 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEG 256
++ VIV+GTG+ E +++ S GK VLH+D +D+YG AS N L + G
Sbjct: 4 EYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPG 58
Score = 33.5 bits (73), Expect = 0.037
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 403 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFR 504
R + +D PK L + G L +LI +++ RY EF+
Sbjct: 69 RDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFK 102
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 46.4 bits (105), Expect = 5e-06
Identities = 20/69 (28%), Positives = 40/69 (57%)
Frame = +3
Query: 501 PMRTRVLTWLNDQLMPVPCSRADVFATEAVGIVEKRMLMKMLTSIVGYSEEEMNNEFKDW 680
P R+ L N++ + VP SRAD+F + + + KR++M+ + + ++E+ N K+W
Sbjct: 130 PARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLVKEW 189
Query: 681 NNKTLKEYL 707
+K ++L
Sbjct: 190 ESKPFYKFL 198
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +2
Query: 80 DFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQK 241
D P + VI+VGT + SI++AA S + VLH+D + YG + S L++
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQ 55
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 33.5 bits (73), Expect = 0.037
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +3
Query: 606 RMLMKMLTSIVGYSEEEMNNEFKDWNNKTLKEYLTHKGLT--PNL-IHYILYAIAAGTT 773
RML+++ ++ Y E +F D KTL L H G + PNL + ++ Y AA T
Sbjct: 1231 RMLLEVAKNVNTYCESRQQKDFIDLMGKTLSSVLFHAGKSSDPNLTVDFLAYHKAAADT 1289
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 29.1 bits (62), Expect = 0.79
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +1
Query: 262 DPDRQKQVYNLSEKWFIEKESAQGE--TTDENKGEPRKVWSQADFAAEYRKFNIDTTPKL 435
DP Q +V K + K S T ++ GEP+ A+ Y F + PKL
Sbjct: 302 DPAHQDEVEVFGRKIIVPKASGNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKL 361
Query: 436 LFSRGPLVELLISSNIARY 492
L+ I+ A Y
Sbjct: 362 SIESKDLIHRFITFIDALY 380
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 433 ALELYQC*ISDTPLQNQLGSILFLVHLCFHQLFRLVQ 323
AL QC + PL ++GS FL+ L FH LF +Q
Sbjct: 34 ALFACQCLVLIRPLARKIGSFPFLI-LTFHTLFYPIQ 69
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 101 VIVVGTGMVESIVAAACSRIG-KNVLHMDSSDHYGGLWASYNFEGLQK 241
V+V+G G AAA SR+G K L S D+ G + + F G+ K
Sbjct: 19 VVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQMSCNPAFGGIGK 66
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +1
Query: 256 NSDPDRQKQVYNLSEKWFIEKE-SAQGETTDENKGEPRKVWSQADFAAEYR 405
NSDP + + Y WF + A D+ GE WS D Y+
Sbjct: 240 NSDPQFRPK-YQAKSSWFAPDDPEASWGNLDDGWGETNGSWSSTDDTKHYK 289
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 232 PTEVHKRGNSDPDRQKQVYNLSEKWFIEKESAQG 333
P+EV K ++ P QK + +S++W + G
Sbjct: 7 PSEVEKSSSASPAPQKPMIRVSKQWVVPPRPKPG 40
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 95 FQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEG 256
FQV ++G G + + A S+ G V D ++Y + A+Y G +K+G
Sbjct: 5 FQVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATYG-NGGYTVLKDG 57
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 196 MITRVHVEDILAYPTASSSHYGLDHARSHHDDL 98
+I ++V I+ PTA++ YGLD + H ++
Sbjct: 161 LIAGLNVLRIINEPTAAAIAYGLDRSNQHETNV 193
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +1
Query: 238 EVHKRGNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNI 417
E+H+ + +QV NLS + +E + + + EN E ++ SQ + +Y +
Sbjct: 1529 EIHELRSDKEGLVQQVQNLSAELAALREHSPTQGSLENADEIARLRSQLESTKQYYEKEK 1588
Query: 418 DTTPKLLFSRGPLV 459
+T ++L +R LV
Sbjct: 1589 ET--EILAARSELV 1600
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 7.4
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +2
Query: 215 SYNFEGLQKFIKEGTVILIDK-NKCTTYLKNGL------LKRNLH-KAKQLMKTKVNQEK 370
S N EGL +E ID+ N T L+N + +R H K+ L K K NQEK
Sbjct: 18 SSNNEGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEK 77
Query: 371 YGAKLILQRSIGNLTLI 421
+L +GN+ I
Sbjct: 78 ISNNKMLPYLVGNVVEI 94
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 98 QVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGG 205
Q IV+G G+ +G NVL +D + +GG
Sbjct: 40 QAIVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGG 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,765
Number of Sequences: 5004
Number of extensions: 69780
Number of successful extensions: 233
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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