Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1794
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 59 4e-09
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 48 7e-06
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 47 2e-05
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 47 2e-05
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 46 3e-05
09_04_0425 - 17448906-17449195,17449489-17449600 31 1.1
05_02_0072 - 6334613-6335215 31 1.1
01_03_0233 + 14042548-14044950 30 2.5
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976 29 4.4
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 4.4
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 7.8
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 28 7.8
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 28 7.8
01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246 28 7.8
01_03_0044 - 11927272-11928516 28 7.8
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 59.3 bits (137), Expect = 4e-09
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +2
Query: 86 PTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFI 247
PT F V++ GTG+ ES++AAAC+ GK VLH+D + YG L++S L F+
Sbjct: 21 PTSFDVVLCGTGLPESVLAAACAAAGKTVLHVDPNPFYGSLFSSLPLPSLPSFL 74
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Frame = +3
Query: 516 VLTWLNDQLMPVPCSRADVFATEAVGIVEKRMLMKMLTSIVGY-----------SEEEMN 662
+L W D L PVP SR +F + + EK +L + + + E E +
Sbjct: 157 LLYWDGD-LYPVPDSRQAIFKDTTLQLREKNLLFRFFKLVQAHIAASAAGAAAAGEGEAS 215
Query: 663 NEFKDWN-NKTLKEYLTHKGLTPNLIHYILYAIA 761
D + + E+L + L+P + +LYAIA
Sbjct: 216 GRLPDEDLDLPFVEFLKRQNLSPKMRAVVLYAIA 249
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 48.4 bits (110), Expect = 7e-06
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 92 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIK 250
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K K
Sbjct: 4 EYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESTSLNLTKLWKRFK 56
Score = 37.1 bits (82), Expect = 0.017
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 531 NDQLMPVPCSRADVFATEAVGIVEKRMLMKMLTSIVGYSEEE-MNNEFKDWNNKTLKEYL 707
N ++ VP + + + +G+ EKR K + Y E++ ++E D + T +E +
Sbjct: 112 NGKIHKVPATDVEALKSNLMGLFEKRRARKFFIYVQDYEEDDPKSHEGLDLHKVTTREVI 171
Query: 708 THKGLTPNLIHYILYAIA 761
+ GL + + +I +A+A
Sbjct: 172 SKYGLEDDTVDFIGHALA 189
Score = 36.3 bits (80), Expect = 0.029
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +1
Query: 331 GETTDENKGEPRKVWSQADFAAEY----RKFNIDTTPKLLFSRGPLVELLISSNIARYAE 498
GE+T N + K + + A E+ +++N+D PK + + G LV +LI +++ +Y
Sbjct: 41 GESTSLNLTKLWKRFKGNETAPEHLGVSKEYNVDMVPKFMMANGALVRVLIHTSVTKYLN 100
Query: 499 FR 504
F+
Sbjct: 101 FK 102
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +2
Query: 92 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQK 241
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWK 53
Score = 34.7 bits (76), Expect = 0.089
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 403 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFR 504
R +N+D PK + + G LV LI +++ +Y F+
Sbjct: 69 RDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFK 102
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +2
Query: 92 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQK 241
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L K
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWK 53
Score = 33.5 bits (73), Expect = 0.21
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 403 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFR 504
+ +N+D PK + + G LV LI +++ +Y F+
Sbjct: 69 KDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFK 102
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 92 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIK-EGT 259
++ VIV+GTG+ E I++ S VLHMD +D+YGG S N L K K EGT
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGT 60
Score = 36.7 bits (81), Expect = 0.022
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 549 VPCSRADVFATEAVGIVEKRMLMKMLTSIVGYSEEE-MNNEFKDWNNKTLKEYLTHKGLT 725
VP + + + +G+ EKR K + Y E + ++ D N T KE ++ GL
Sbjct: 118 VPSTDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLD 177
Query: 726 PNLIHYILYAIA 761
N I +I +A+A
Sbjct: 178 DNTIDFIGHAVA 189
Score = 34.7 bits (76), Expect = 0.089
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 403 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFR 504
R +N+D PK + + G LV +LI + + +Y F+
Sbjct: 69 RDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFK 102
>09_04_0425 - 17448906-17449195,17449489-17449600
Length = 133
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 441 EQQLWSCINVKFPILRCKISLAPYFSWF 358
++Q++ C ++ FP++ SL YF WF
Sbjct: 44 QRQMFYCTHLNFPVMLATCSLKSYFLWF 71
>05_02_0072 - 6334613-6335215
Length = 200
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -2
Query: 668 LIVHLLFAVTDNRCQHFHEHPFLDDTDRFGGEYVGSGARNRHQLIVEPGQDAGPHRNSA* 489
L++HLL A N HF H +DD E+ + H +++EP + P SA
Sbjct: 89 LVLHLLLAERINTVMHFAAHTHVDDN---SFEFTKNNVLGTH-VLLEPCRRKAPPAPSAA 144
Query: 488 RAMFEEIRSSTRGPR 444
+ RS+ PR
Sbjct: 145 SSTSAPTRSTATLPR 159
>01_03_0233 + 14042548-14044950
Length = 800
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 603 KRMLMKMLTSIVGYSEEEMNNEFKDW 680
+RML+ ++ ++ ++E E++ EF DW
Sbjct: 185 RRMLLSLVPAVRAHAEREISREFSDW 210
>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
Length = 363
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 593 TDRFGGEYVGSGARNRHQLIVEPGQDAGPHRNS 495
TD FGG + S + + HQL + P + P +S
Sbjct: 97 TDHFGGAFFSSSSSSSHQLPLPPPLSSSPSSSS 129
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 235 TEVHKRGNSDPDRQKQVYNLSEKWFIEKESAQGETTDENK 354
T VH+ ++ D + + NL + F +ES + DENK
Sbjct: 4641 TNVHEESSTSSDVEVEAVNLRDDTFHIRESTAAKLDDENK 4680
>10_08_0894 -
21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 277 KQVYNLSEKWFIEKESAQGET 339
+Q ++ EKW +EK +AQGET
Sbjct: 664 RQSHSNLEKWLVEKLTAQGET 684
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 651 EEMNNEFKDWNNKTLKEYLTHKGLTPNLIHYILYAI 758
EE NE KDWN +K++ K L P L+ +++ ++
Sbjct: 659 EENQNEQKDWNKGGIKKHFISK-LPPVLVIHLMRSL 693
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 265 PDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNI 417
P RQ V+ + W E+ + QG G + WS+A F A YR++N+
Sbjct: 187 PTRQP-VHVFASIWNAEEWATQG-------GRVKTDWSRAPFVATYRRYNV 229
>01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246
Length = 749
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -2
Query: 623 HFHEHPFLDD-TDRFGGEYVGSGARNRHQLIVEPGQDAGPHRNSA*RAMFEEIRSSTRGP 447
H H P D +RF + GS A +L E + A PH + R R S+ P
Sbjct: 534 HPHSKPIWDTYLERFVARHGGSKAERARELFAEATRRAPPHDRA--RLFLRHARRSSAPP 591
Query: 446 R 444
R
Sbjct: 592 R 592
>01_03_0044 - 11927272-11928516
Length = 414
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 92 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASY 220
DF VIVVG G++ S A A + G L ++ D L +S+
Sbjct: 20 DFDVIVVGAGIMGSCAAHAAASRGARALLLERFDLLHHLGSSH 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,377,052
Number of Sequences: 37544
Number of extensions: 472029
Number of successful extensions: 1396
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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