Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1794
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical ...    66   4e-11
AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical ...    66   4e-11
Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical p...    44   2e-04
Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical p...    44   2e-04
U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.       44   2e-04
Z66512-1|CAA91322.1|  638|Caenorhabditis elegans Hypothetical pr...    35   0.061
U88165-9|AAK21394.1|  280|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U23529-6|AAL32208.1|  384|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    30   2.3  
AC024843-3|AAF60838.1|  110|Caenorhabditis elegans Hypothetical ...    30   2.3  
U39652-1|AAA80403.2|  552|Caenorhabditis elegans Abnormal cell m...    29   4.0  
AB126261-1|BAD02168.1|  552|Caenorhabditis elegans MIG-23 protein.     29   4.0  

>AC091125-8|AAP46267.1|  353|Caenorhabditis elegans Hypothetical
           protein Y67D2.1b protein.
          Length = 353

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 28/71 (39%), Positives = 48/71 (67%)
 Frame = +2

Query: 71  MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIK 250
           MDE  P    V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S+    + + + 
Sbjct: 1   MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHE-VT 59

Query: 251 EGTVILIDKNK 283
           E  V  +D ++
Sbjct: 60  ENQVKKLDSSE 70



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/51 (39%), Positives = 35/51 (68%)
 Frame = +1

Query: 352 KGEPRKVWSQADFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFR 504
           K E + + +Q + A++ R+F+ID  PK+L S+G +V+ L  S ++ YAEF+
Sbjct: 105 KDEEKPMKTQLEEASQMRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFK 155



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query: 540 LMPVPCSRADVFATEAVGIVEKRMLMKMLTSIVGYS---EEEMNNEFKDWNNKTLKEYLT 710
           L PVPCS+ ++F + A+ I+EKR LMK +T    +S    EE      +  ++   E+L 
Sbjct: 173 LNPVPCSKGEIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLE 232

Query: 711 HKGLTPNLIHYILYAI 758
             G+   L  +I+  I
Sbjct: 233 QMGVGKTLQSFIINTI 248


>AC091125-7|AAK27890.1|  510|Caenorhabditis elegans Hypothetical
           protein Y67D2.1a protein.
          Length = 510

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 28/71 (39%), Positives = 48/71 (67%)
 Frame = +2

Query: 71  MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIK 250
           MDE  P    V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S+    + + + 
Sbjct: 1   MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHE-VT 59

Query: 251 EGTVILIDKNK 283
           E  V  +D ++
Sbjct: 60  ENQVKKLDSSE 70



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 20/51 (39%), Positives = 35/51 (68%)
 Frame = +1

Query: 352 KGEPRKVWSQADFAAEYRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFR 504
           K E + + +Q + A++ R+F+ID  PK+L S+G +V+ L  S ++ YAEF+
Sbjct: 105 KDEEKPMKTQLEEASQMRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFK 155



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query: 540 LMPVPCSRADVFATEAVGIVEKRMLMKMLTSIVGYS---EEEMNNEFKDWNNKTLKEYLT 710
           L PVPCS+ ++F + A+ I+EKR LMK +T    +S    EE      +  ++   E+L 
Sbjct: 173 LNPVPCSKGEIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLE 232

Query: 711 HKGLTPNLIHYILYAI 758
             G+   L  +I+  I
Sbjct: 233 QMGVGKTLQSFIINTI 248


>Z99281-33|CAJ44242.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10b protein.
          Length = 459

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = +2

Query: 92  DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 217
           ++  IV+GTG+ E I++   S  GK VLH+D +++YGG  AS
Sbjct: 4   EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESAS 45



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +1

Query: 403 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCGPAS 519
           R +N+D  PK L + GPLV+LLI + + RY EF+   AS
Sbjct: 71  RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEAS 109


>Z99281-32|CAB16511.1|  444|Caenorhabditis elegans Hypothetical
           protein Y57G11C.10a protein.
          Length = 444

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = +2

Query: 92  DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 217
           ++  IV+GTG+ E I++   S  GK VLH+D +++YGG  AS
Sbjct: 4   EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESAS 45



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +1

Query: 403 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCGPAS 519
           R +N+D  PK L + GPLV+LLI + + RY EF+   AS
Sbjct: 71  RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEAS 109


>U00002-1|AAA17051.1|  444|Caenorhabditis elegans rabGDI protein.
          Length = 444

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = +2

Query: 92  DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 217
           ++  IV+GTG+ E I++   S  GK VLH+D +++YGG  AS
Sbjct: 4   EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESAS 45



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +1

Query: 403 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCGPAS 519
           R +N+D  PK L + GPLV+LLI + + RY EF+   AS
Sbjct: 71  RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEAS 109


>Z66512-1|CAA91322.1|  638|Caenorhabditis elegans Hypothetical
           protein F52H3.2 protein.
          Length = 638

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 62  TRMMDEDFPTDFQVIVVGTGMVESIVAAACSRIGKN-VLHMDSSDHYGGLWASYNFEGLQ 238
           TR++   F TD  VIV+G G      AAA +R G N VL   + +  G +  + +F G+ 
Sbjct: 6   TRLLRRCFQTDVDVIVIGGGHAGCESAAAAARCGSNTVLVTQNKNTIGEMSCNPSFGGIG 65

Query: 239 K 241
           K
Sbjct: 66  K 66


>U88165-9|AAK21394.1|  280|Caenorhabditis elegans Hypothetical
           protein F54C1.6 protein.
          Length = 280

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 773 CCSRSDRVQDVVNEVRGQALVSQVFLQCLVVPVFKLIVHLLFAVTDNR 630
           CC RS +V D  +EV G+  +  VF+ C    + + +   L A  ++R
Sbjct: 19  CCGRSAQVADSSDEVIGKQQLKNVFIVCTQNVLTRALTGKLIAALEDR 66


>U23529-6|AAL32208.1|  384|Caenorhabditis elegans Hypothetical
           protein C15B12.1 protein.
          Length = 384

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 89  TDFQVIVVGTGMVESIVAAACSRIGKNVLHMD 184
           TD+ V+VVG G+  S  A  C +IG   L ++
Sbjct: 3   TDYDVVVVGAGIFGSCTAYNCQKIGLKTLLLE 34


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 632 RCQHFHEHPFLDDTDRFGGEYVGSGARNRHQLIVEPGQDA 513
           RC  FH   F+D+ ++   E V    R  H+++++P Q A
Sbjct: 49  RCLMFHPDRFVDNDEKKDAERVFVKLRRAHEVLLDPKQRA 88


>AC024843-3|AAF60838.1|  110|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.7 protein.
          Length = 110

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 265 PDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQAD-FAAEYRKF 411
           PDR +++    +++  ++   +   +  +K EP+KV+   D F ++Y+KF
Sbjct: 47  PDRLQELKTAHDEFEAQRRGKRAAISASDKPEPKKVFDIIDQFTSDYQKF 96


>U39652-1|AAA80403.2|  552|Caenorhabditis elegans Abnormal cell
           migration protein 23 protein.
          Length = 552

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 401 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLF 255
           +S+++S W   F  S +F   V  CA   S+  F DK  + F +S S +
Sbjct: 485 HSSSESLWAPLFFLSAVFCLFVLVCAKEQSVLCFDDKRRSSFGMSRSQY 533


>AB126261-1|BAD02168.1|  552|Caenorhabditis elegans MIG-23 protein.
          Length = 552

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 401 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLF 255
           +S+++S W   F  S +F   V  CA   S+  F DK  + F +S S +
Sbjct: 485 HSSSESLWAPLFFLSAVFCLFVLVCAKEQSVLCFDDKRRSSFGMSRSQY 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,166,988
Number of Sequences: 27780
Number of extensions: 404009
Number of successful extensions: 1350
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)