Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1792
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   6.6  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   8.7  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.7  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    25   8.7  

>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 688 VKIHRFSINGYKVRSVEIPTIAQFDYRY 605
           ++ +RF + GY+V+ + IP I   D  Y
Sbjct: 524 LQANRFDLQGYQVKKLSIPIIVNEDGIY 551


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = -2

Query: 178 SFPWTVFHLA--GACIS 134
           SFPWT F LA  G CIS
Sbjct: 185 SFPWTYFCLAVSGTCIS 201


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 678 IVSLLMGIKCGASKYRLLRSLIIGITYRPVWTCCMYSACMYKVFNK 541
           IV +L+GI  GAS  +  R+ I  + Y  +  C    A +Y  F K
Sbjct: 300 IVLILLGISLGASSGKWRRANI--LCYLIIGGCLFVFAFIYDTFTK 343


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 57  TEALRLYKRPFLERLVSP-GSRGGISQL 137
           T + RLYK+P LE L+S   S+G + Q+
Sbjct: 161 TGSFRLYKKPVLETLMSEVTSKGYVFQM 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,756
Number of Sequences: 5004
Number of extensions: 66295
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)