Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1792
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     31   0.74 
01_06_0930 + 33134385-33138257                                         31   1.3  

>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
 Frame = +2

Query: 53   KDRSPEAVQEAFLGKVSVARLQRWYITADASPG*MENRPRETQLVVEQ-GQEFEPFDIK- 226
            +D   E V  +F   VS   +  WYI  D      E+  +E    +E  G +  P  ++ 
Sbjct: 673  RDYFNEMVSGSFFQPVSERYMGTWYIMHDLLHDLAESLTKEDCFRLEDDGVKEIPTTVRH 732

Query: 227  LVVL*APVTINNGXXXXXXXXRTILCLDKLMGGTVD*FTGIITSALTLLVLSLFSY 394
            L V    +  +          RT++C+D LM    D F  ++ +   L VL L  Y
Sbjct: 733  LSVRVESMKFHKQSICKLRYLRTVICIDPLMDNGDDVFNQVLKNLKRLRVLYLSFY 788


>01_06_0930 + 33134385-33138257
          Length = 1290

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
 Frame = +2

Query: 53  KDRSPEAVQEAFLGKVSVARLQRWYITADASPG*MENRPRETQLVVEQ-GQEFEPFDIK- 226
           +D   E V  +F   VS   +  WYI  D      E+  +E    +E  G +  P  ++ 
Sbjct: 489 RDYFNEMVSGSFFQPVSERYMGTWYIMHDLLHDLAESLTKEDCFRLEDDGVKEIPATVRH 548

Query: 227 LVVL*APVTINNGXXXXXXXXRTILCLDKLMGGTVD*FTGIITSALTLLVLSLFSY 394
           L +    +  +          RT++C+D LM    D F  ++ +   L VL L  Y
Sbjct: 549 LSICVDSMKFHKQKICKLRYLRTVICIDPLMDDGDDIFNQLLKNLKKLRVLHLSFY 604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,236,955
Number of Sequences: 37544
Number of extensions: 397203
Number of successful extensions: 818
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)