Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1792
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear recep...    29   4.7  
Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U80031-4|AAB37614.1|   54|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 507 LSVNLTLISVYIFLKLKFFCNVLFFRDPSFSDFYKI 400
           LS++ T ++V+ F+ + F CNV FF+D       K+
Sbjct: 50  LSIDYTWVAVFTFIDV-FLCNVPFFKDAKIQKDRKV 84


>Z83233-2|CAB05761.1|  338|Caenorhabditis elegans Hypothetical
           protein K06B4.2 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 600 YRPVWTCCMYSACMYKVFNKLKTFINNHLKFLSVNLTLISVYIFLKLKFFCNVLFFR 430
           Y+ ++   ++  C  K  +K  T  N+ L   +VN   +  Y F+ + F C V  F+
Sbjct: 270 YQNMYASFLFRFCQLKNQHKAPTRFNDILSICNVNNKNVEDYCFVHMMFQCMVPEFK 326


>AF273797-2|AAG15146.1|  338|Caenorhabditis elegans nuclear receptor
           NHR-52 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 600 YRPVWTCCMYSACMYKVFNKLKTFINNHLKFLSVNLTLISVYIFLKLKFFCNVLFFR 430
           Y+ ++   ++  C  K  +K  T  N+ L   +VN   +  Y F+ + F C V  F+
Sbjct: 270 YQNMYASFLFRFCQLKNQHKAPTRFNDILSICNVNNKNVEDYCFVHMMFQCMVPEFK 326


>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 693 DPSRYIVSLLMGIKCGASKYRLLRSLIIGITYRPVWTCCMYSA-CMYKVFNKLKTFINNH 517
           DPS +I S+LM +    S   +  SLII I  +       ++  CM + F  L   I NH
Sbjct: 18  DPSSFIASILMIVN--GSFGVVCNSLIIYIFCKETKERTAFNVICMVRAFVNLYILITNH 75

Query: 516 LKFLSVNLTL 487
           L  L V +TL
Sbjct: 76  LG-LFVPMTL 84


>U80031-4|AAB37614.1|   54|Caenorhabditis elegans Hypothetical
           protein B0554.3 protein.
          Length = 54

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 105 SPGSRGGISQLMQAPAKWKTVHG-KLNSLWSKAKNLNLL 218
           SPG+    S   Q  +KW      K+  + S AKNLNLL
Sbjct: 16  SPGTGPVASSTAQPLSKWLNFESLKMTCIMSAAKNLNLL 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,903
Number of Sequences: 27780
Number of extensions: 370812
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)