Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1791X
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   0.63 
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   0.84 
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   3.4  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    25   3.4  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    24   7.8  

>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 130 HS*CKPRLNGTPSTGNSTRCGARPRIG 210
           H+   P  NGTP++GNS+  G+ P IG
Sbjct: 617 HTSVAPSPNGTPTSGNSSTVGS-PMIG 642


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 18  NHLDDRKVNDDQRTEALRLYKRPFLERLVSPGSRGGISQLMQ 143
           N L +RK N     E   LYK  FL+R +   +     ++M+
Sbjct: 30  NELQNRKCNQASNEEKKILYKSNFLDRFIPSKANSDAFRIME 71


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = -1

Query: 178 SFPWTVFHLA--GACIS 134
           SFPWT F LA  G CIS
Sbjct: 185 SFPWTYFCLAVSGTCIS 201


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 57  TEALRLYKRPFLERLVSP-GSRGGISQL 137
           T + RLYK+P LE L+S   S+G + Q+
Sbjct: 161 TGSFRLYKKPVLETLMSEVTSKGYVFQM 188


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 357 LVMIPVN*STVPPISLSRQSIVRIMEELTIY 265
           L+ IP   + +PPIS     + R  E  T Y
Sbjct: 175 LIQIPAKGTPLPPISPKTNVLARYPETTTFY 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,097
Number of Sequences: 5004
Number of extensions: 34604
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)