Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1791X
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 32 0.20
01_06_0930 + 33134385-33138257 31 0.35
06_03_0431 + 20713186-20713977 28 2.4
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323... 28 3.2
02_04_0295 + 21682029-21683534 27 4.3
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 27 4.3
01_06_0928 + 33085403-33089224 27 5.6
08_02_0368 - 16312961-16314588,16314794-16314890,16316360-163164... 27 7.5
01_05_0356 - 21338488-21340062 27 7.5
11_01_0457 - 3532604-3532971,3533072-3534019,3534304-3534331 26 9.9
04_04_0542 - 26104362-26104607,26104788-26105130,26107176-26107663 26 9.9
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 31.9 bits (69), Expect = 0.20
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Frame = +2
Query: 53 KDRSPEAVQEAFLGKVSVARLQRWYITADASPG*MEHRPRETQLVVEQ-GQESEPFDIK- 226
+D E V +F VS + WYI D E +E +E G + P ++
Sbjct: 673 RDYFNEMVSGSFFQPVSERYMGTWYIMHDLLHDLAESLTKEDCFRLEDDGVKEIPTTVRH 732
Query: 227 LVVL*APVTINNGXXXXXXXXRTILCLDKLMGGTVD*FTGIITSALTLLVLSLFSY 394
L V + + RT++C+D LM D F ++ + L VL L Y
Sbjct: 733 LSVRVESMKFHKQSICKLRYLRTVICIDPLMDNGDDVFNQVLKNLKRLRVLYLSFY 788
>01_06_0930 + 33134385-33138257
Length = 1290
Score = 31.1 bits (67), Expect = 0.35
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 2/116 (1%)
Frame = +2
Query: 53 KDRSPEAVQEAFLGKVSVARLQRWYITADASPG*MEHRPRETQLVVEQ-GQESEPFDIK- 226
+D E V +F VS + WYI D E +E +E G + P ++
Sbjct: 489 RDYFNEMVSGSFFQPVSERYMGTWYIMHDLLHDLAESLTKEDCFRLEDDGVKEIPATVRH 548
Query: 227 LVVL*APVTINNGXXXXXXXXRTILCLDKLMGGTVD*FTGIITSALTLLVLSLFSY 394
L + + + RT++C+D LM D F ++ + L VL L Y
Sbjct: 549 LSICVDSMKFHKQKICKLRYLRTVICIDPLMDDGDDIFNQLLKNLKKLRVLHLSFY 604
>06_03_0431 + 20713186-20713977
Length = 263
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 90 LERLVSPGSRGGISQLMQAPAKWNTVHGKLNSLWSKAKNR 209
LE + PG+ + L+ N+VHG+ + W +++ R
Sbjct: 170 LEEMSPPGAAAAAAMLLTCAMCRNSVHGECFARWKRSRGR 209
>08_02_0182 -
13930436-13931245,13931348-13931627,13931788-13932324,
13932482-13932579,13932678-13933118
Length = 721
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 361 GACNDSCKLINCPTH*FIQAKYCP 290
GA +D C L +CPT + A+ CP
Sbjct: 694 GAADDHCPLASCPTAPGVFARGCP 717
>02_04_0295 + 21682029-21683534
Length = 501
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 157 HLAGACISCDIPPLEPGDTNLSKKGLLYSLR 65
+ G C PPL PG T L G L SLR
Sbjct: 27 YAGGGCSRSSRPPLPPGPTPLPLIGNLLSLR 57
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 27 DDRKVNDDQRTEALRLYKRPFLER 98
D + VNDD+RTE L +YK +E+
Sbjct: 310 DCKYVNDDRRTEELIVYKVDLVEK 333
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 27.1 bits (57), Expect = 5.6
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
Frame = +2
Query: 53 KDRSPEAVQEAFLGKVSVARLQRWYITADASPG*MEHRPRETQLVVEQGQESE-PFDIK- 226
+D E V +F VS + YI D E +E ++ + E P ++
Sbjct: 453 RDYFNEMVSGSFFQPVSKTYVGTRYIMHDLLHDLAEALSKEDCFRLDDDKVKEMPSTVRH 512
Query: 227 LVVL*APVTINNGXXXXXXXXRTILCLDKLMGGTVD*FTGIITSALTLLVLSLFSY 394
L V +T++ RT++C+D L D F ++ L VL L Y
Sbjct: 513 LSVCVQSMTLHKQSICKLHHLRTVICIDPLTDDGTDIFNEVVRKLKKLRVLYLSFY 568
>08_02_0368 -
16312961-16314588,16314794-16314890,16316360-16316489,
16316605-16316657
Length = 635
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 11 IVKSFGR*KGQRRPKDRSPEAVQEAFLGKVSVARLQRWY 127
I+ FG +RRP+D E +E + + R++RW+
Sbjct: 237 ILVRFGDVVMRRRPEDEEVEEEEETTADGIVLRRVRRWF 275
>01_05_0356 - 21338488-21340062
Length = 524
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 124 PPLEPGDTNLSKKGLLYSLRASVLWSSLTFLS 29
PPL PG T L G L LR V+ L L+
Sbjct: 37 PPLPPGPTPLPLIGNLLDLRGGVIHDKLAALA 68
>11_01_0457 - 3532604-3532971,3533072-3534019,3534304-3534331
Length = 447
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 315 SLSRQSIVRIMEELTIYPLLMVTGAHKTTNFISKGSDSW 199
SLS S R + +++ + TG T+N I KG S+
Sbjct: 110 SLSLPSFARHLPQVSYNMIFRATGGFSTSNLIGKGRYSY 148
>04_04_0542 - 26104362-26104607,26104788-26105130,26107176-26107663
Length = 358
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 6 FPLLNHLDDRKVNDDQRTEALRLYKRPF 89
F L NH R++ ++ R E RL++ PF
Sbjct: 83 FQLTNHGVGRELMEEMRREQARLFRLPF 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,830
Number of Sequences: 37544
Number of extensions: 242080
Number of successful extensions: 497
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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