Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1789
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905...    32   0.57 
08_01_0048 + 335868-336682,338382-340386                               29   3.0  
09_04_0289 + 16424385-16424447,16424678-16424766,16424925-164250...    29   5.3  
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689...    28   7.0  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    28   7.0  
06_03_1189 + 28271185-28271394,28272421-28273326                       28   9.2  
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736...    28   9.2  

>05_03_0162 -
           9050981-9051003,9051141-9052273,9052388-9053310,
           9053560-9054615
          Length = 1044

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 217 CWKETATSLIRISPHIQYAYWWITGVHDPVPFLEQQLGSFKGEVREQNESMGQSDFGSH 393
           C+KE     + I P+ +YA  W++ +HD V    Q L   +  V    + +G+    SH
Sbjct: 480 CYKELIYRNL-IEPNAEYAGEWVSTMHDVVRSFAQHLARDEALVISSRDEIGRGALKSH 537


>08_01_0048 + 335868-336682,338382-340386
          Length = 939

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +1

Query: 334 FKGEVREQNESMGQSDFGSHWTIH-DPRGTRSSVQLIRSSPGRIRVCRTHHRDFHEEDTQ 510
           ++  VRE    M +     ++T H D R + S   LIR    R+R  R  HR   + +  
Sbjct: 64  WRNHVREMAYDM-EDCIDDYFTSHLDHRYSSSDAGLIRKIARRLRALRVRHRIASQINEL 122

Query: 511 EAKWSVENIPVIEKWLDDYVARYGVN 588
           +A+    N   +   LDD   ++GV+
Sbjct: 123 KARVVEANERRVRYRLDDCNNKHGVS 148


>09_04_0289 +
           16424385-16424447,16424678-16424766,16424925-16425068,
           16425713-16426189,16426320-16426527
          Length = 326

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 41  PVHWPGLHVRYQKGMGIWPSARHQLSSVEEAK*KNLPPEDFSW 169
           P+ W  +  R++K M  +    H L+S EE + + +  E   W
Sbjct: 90  PISWSKVETRFEKDMLAFTGCSHSLTSEEEEELRKMRYEVSHW 132


>05_03_0328 -
           12468142-12468262,12468443-12468641,12468758-12468974,
           12469896-12469994,12470843-12470899,12470943-12472577
          Length = 775

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 457 RIRVCRT-HHRDFHEEDTQEAKWSVENIPVIEKWLDDYVARYGVNDELLVQNK*YHKV 627
           R+R CR    R F    T   +   E   ++E+WL+  V+   + D  LVQ K   KV
Sbjct: 664 RVRRCRAIFERAFEYFRTSAPELKEERAMLLEEWLNKEVSFGDLGDVTLVQKKAPRKV 721


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 13  ILMKETQLQTSTLARSSRTVPERNGNLAF-SASSTFLRRGSKVKELTS*RL*LAAPLKST 189
           +  + TQ Q  T+ R S ++  R   +A  S  +  +    K+K   S +   AAP+ ST
Sbjct: 222 VQQQPTQKQAPTVLRRSASIAARQAAMAQQSQDAKTVPSSPKIKRQASTK---AAPVAST 278

Query: 190 RLTGS 204
           +LTG+
Sbjct: 279 KLTGA 283


>06_03_1189 + 28271185-28271394,28272421-28273326
          Length = 371

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 298 RVPL*STSKHTEYEERSVSVKLPFPSSSVMFRSLLILYSSMGQP 167
           R PL S S HT +        LPFPS +  F  +L+L+ ++  P
Sbjct: 26  RAPLPSLSLHTFFLLAMPPPSLPFPSLAYQF--VLVLWPNLANP 67


>06_03_0934 -
           26073084-26073220,26073296-26073345,26073465-26073634,
           26073651-26073803,26073877-26074032,26074227-26074350,
           26075066-26075178,26076336-26076469,26077391-26077578,
           26077718-26078139
          Length = 548

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = +1

Query: 478 HHRDFHEEDTQEAKWSVE----NIPVIEKWLDDY 567
           HH DF      +  W VE     + +I+ W+D Y
Sbjct: 506 HHLDFRSATKDDPDWVVEQRRQEVKIIQGWIDQY 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,642,330
Number of Sequences: 37544
Number of extensions: 490155
Number of successful extensions: 1294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)