Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1789
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U58758-14|AAB93433.2|  842|Caenorhabditis elegans High incidence...    29   2.7  
AF178755-1|AAD52669.1|  842|Caenorhabditis elegans HIM-14 protei...    29   2.7  
AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical...    28   6.2  
Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z71185-7|CAA94907.2|  520|Caenorhabditis elegans Hypothetical
           protein C35A5.5 protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 348 NFSFKTAQLLFKKWNRVVY 292
           NF F+  ++L KKWN V+Y
Sbjct: 10  NFDFRRIKILLKKWNVVIY 28


>U58758-14|AAB93433.2|  842|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 14 protein.
          Length = 842

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 457 RIRVCRTHHRDFHEEDTQEAKWSVENIPVIEKWLDDYVARYGVNDEL 597
           R R C  +  D H E  +E K +++ +  + K+L D +A+    +++
Sbjct: 794 RFRECAEYFMDTHGEKWKEEKEAIDKMKALRKYLVDELAKIDSQEQM 840


>AF178755-1|AAD52669.1|  842|Caenorhabditis elegans HIM-14 protein
           protein.
          Length = 842

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 457 RIRVCRTHHRDFHEEDTQEAKWSVENIPVIEKWLDDYVARYGVNDEL 597
           R R C  +  D H E  +E K +++ +  + K+L D +A+    +++
Sbjct: 794 RFRECAEYFMDTHGEKWKEEKEAIDKMKALRKYLVDELAKIDSQEQM 840


>AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical
           protein Y57A10A.24 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 383 KSDCPIDSFCSRTSPLKLPNCCSRNGTGSCTPVIHQ 276
           K++CP  SFC  +S   +  CCS        P+  Q
Sbjct: 100 KNNCPDGSFCVSSSQDGMSICCSNRSIEKSFPITSQ 135


>Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical
           protein R04F11.2 protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 457 RIRVCRTHHRDFHEEDTQEAKWSVENIPVIEKWLDDYVARY 579
           R+R  R +H D  E D ++A  + E     +KWL     RY
Sbjct: 42  RLRQIREYHADIREWDHEKAVAAAEEAAKKKKWLAKDEMRY 82


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 289  GVHDPVPFLEQQLGSF--KGEVREQNESMGQSDFGSHWTIHD 408
            G H+P P L +Q+ SF   GE  E   S     FGS   I D
Sbjct: 972  GSHEPFPTLVEQVESFFSDGEEPESGSSSSLGSFGSVEKIAD 1013


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,597,410
Number of Sequences: 27780
Number of extensions: 420396
Number of successful extensions: 1294
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)