Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1788X
         (414 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC098419-1|AAH98419.1|  668|Homo sapiens TBC1D10B protein protein.     31   2.0  
BC093816-1|AAH93816.1|  533|Homo sapiens TBC1 domain family, mem...    31   2.0  
BC093814-1|AAH93814.1|  533|Homo sapiens TBC1 domain family, mem...    31   2.0  
BC072453-1|AAH72453.2|  533|Homo sapiens TBC1 domain family, mem...    31   2.0  
BC063112-1|AAH63112.1|  622|Homo sapiens TBC1D10B protein protein.     31   2.0  
AK023192-1|BAB14454.1|  533|Homo sapiens protein ( Homo sapiens ...    31   2.0  

>BC098419-1|AAH98419.1|  668|Homo sapiens TBC1D10B protein protein.
          Length = 668

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 42  FTSGSQTADCTSLSSLFSRPICKELDIKYLNFLSKWLK*TSFRFEKNGISC 194
           F  GSQ +   SL S     + ++ ++K+L+  S W K  S RF+K  + C
Sbjct: 169 FLGGSQYSG--SLESSIPVDVARQRELKWLDMFSNWDKWLSRRFQKVKLRC 217


>BC093816-1|AAH93816.1|  533|Homo sapiens TBC1 domain family, member
           10B protein.
          Length = 533

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 42  FTSGSQTADCTSLSSLFSRPICKELDIKYLNFLSKWLK*TSFRFEKNGISC 194
           F  GSQ +   SL S     + ++ ++K+L+  S W K  S RF+K  + C
Sbjct: 34  FLGGSQYSG--SLESSIPVDVARQRELKWLDMFSNWDKWLSRRFQKVKLRC 82


>BC093814-1|AAH93814.1|  533|Homo sapiens TBC1 domain family, member
           10B protein.
          Length = 533

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 42  FTSGSQTADCTSLSSLFSRPICKELDIKYLNFLSKWLK*TSFRFEKNGISC 194
           F  GSQ +   SL S     + ++ ++K+L+  S W K  S RF+K  + C
Sbjct: 34  FLGGSQYSG--SLESSIPVDVARQRELKWLDMFSNWDKWLSRRFQKVKLRC 82


>BC072453-1|AAH72453.2|  533|Homo sapiens TBC1 domain family, member
           10B protein.
          Length = 533

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 42  FTSGSQTADCTSLSSLFSRPICKELDIKYLNFLSKWLK*TSFRFEKNGISC 194
           F  GSQ +   SL S     + ++ ++K+L+  S W K  S RF+K  + C
Sbjct: 34  FLGGSQYSG--SLESSIPVDVARQRELKWLDMFSNWDKWLSRRFQKVKLRC 82


>BC063112-1|AAH63112.1|  622|Homo sapiens TBC1D10B protein protein.
          Length = 622

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 42  FTSGSQTADCTSLSSLFSRPICKELDIKYLNFLSKWLK*TSFRFEKNGISC 194
           F  GSQ +   SL S     + ++ ++K+L+  S W K  S RF+K  + C
Sbjct: 123 FLGGSQYSG--SLESSIPVDVARQRELKWLDMFSNWDKWLSRRFQKVKLRC 171


>AK023192-1|BAB14454.1|  533|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13130 fis, clone NT2RP3002972, weakly similar to
           Halocynthia roretzi mRNA for HrPET-1. ).
          Length = 533

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 42  FTSGSQTADCTSLSSLFSRPICKELDIKYLNFLSKWLK*TSFRFEKNGISC 194
           F  GSQ +   SL S     + ++ ++K+L+  S W K  S RF+K  + C
Sbjct: 34  FLGGSQYSG--SLESSIPVDVARQRELKWLDMFSNWDKWLSRRFQKVKLRC 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,633,830
Number of Sequences: 237096
Number of extensions: 805846
Number of successful extensions: 1203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)