Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1788X
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine rece...    28   3.1  
Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF036693-9|AAK29791.2|  573|Caenorhabditis elegans Hypothetical ...    27   4.1  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,...    26   9.4  
AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical...    26   9.4  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    26   9.4  

>U61956-5|AAB03178.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein20 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 139 RKFKYLISSSLQIGRENRELKLVQSAVCDPLVNYISLQAYH 17
           RK  +L  S +   R  REL  ++ + C  L   ISL  YH
Sbjct: 198 RKITFLAPSEVS-NRRQRELNFIRQSFCQGLFMSISLIFYH 237


>Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical
           protein R166.5b protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 314 LVSXREYFRDAQSFYVIIAKFHSGYLLAH 400
           +V   ++F D  +FY+++ K   G LL H
Sbjct: 262 IVQLLDWFEDETNFYLVMEKMRGGPLLQH 290


>Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical
           protein R166.5a protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 314 LVSXREYFRDAQSFYVIIAKFHSGYLLAH 400
           +V   ++F D  +FY+++ K   G LL H
Sbjct: 260 IVQLLDWFEDETNFYLVMEKMRGGPLLQH 288


>AF036693-9|AAK29791.2|  573|Caenorhabditis elegans Hypothetical
           protein C49A9.3 protein.
          Length = 573

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 293 KNFCKFLLVSXREYFRDAQSFYVIIA 370
           K+ C+F   S R+YF D ++F  IIA
Sbjct: 4   KDVCRFFAAS-RKYFTDGETFLTIIA 28


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 387 YPLWNLAIMT*KL*ASLKYSLXETRRNLQKFLEIQLIALDIN 262
           Y + N+  M  K   S + S+  + RNL+ F++ Q + LDI+
Sbjct: 161 YQILNVRQMLKKNQMSFRISVRNSNRNLRDFVDSQHLKLDID 202


>U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,
           short chain protein29 protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 263 FISSAISCISKNFCKFLLVSXREYFRDAQSFY--VIIAKFHSGYL-LAHP 403
           ++    S    +FCK  L+   +Y++  Q F+  +I+      Y+  AHP
Sbjct: 293 YLGVKYSASDPSFCKLTLIEMSDYYKTPQLFWWLLIVPALAINYISYAHP 342


>AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical
           protein T07A9.9b protein.
          Length = 633

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -3

Query: 223 ISNVFSFSSQQLIPFFSNLNDVHFNHFERKFKYLISSSLQIGREN----RELKLVQSAVC 56
           ++++++F     +P    L DV  +  +RK   ++     IGR      R++K +Q  + 
Sbjct: 1   MTSMYNFKRITCVPNAQELKDVVLSKTQRKTPTVVHRQYSIGRIRAFYARKIKFLQQTLH 60

Query: 55  DPLVNYIS 32
           D L   I+
Sbjct: 61  DKLTQIIT 68


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -3

Query: 223 ISNVFSFSSQQLIPFFSNLNDVHFNHFERKFKYLISSSLQIGREN----RELKLVQSAVC 56
           ++++++F     +P    L DV  +  +RK   ++     IGR      R++K +Q  + 
Sbjct: 1   MTSMYNFKRITCVPNAQELKDVVLSKTQRKTPTVVHRQYSIGRIRAFYARKIKFLQQTLH 60

Query: 55  DPLVNYIS 32
           D L   I+
Sbjct: 61  DKLTQIIT 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,296,340
Number of Sequences: 27780
Number of extensions: 142095
Number of successful extensions: 380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)