Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1787X
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   1.9  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   3.3  
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    25   5.8  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   5.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   7.6  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 233 GLIFWLEVFLARSRFRNDFSGSTGPASFCAASSLTSL 123
           G+IF LE  LA S F + F+GS      C+ASS+ +L
Sbjct: 230 GVIFALEQ-LASSSFPSLFTGSIWYEFLCSASSVVAL 265


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -2

Query: 554 NRHFHQLQVVPHLDLPTIISIGGELVCIL--LLSAFLSFPKIQQSSHVSGAQTRVSFASF 381
           +R FH L +VP L L  ++S+G ++   L  LLS  ++   +     ++ +   +   ++
Sbjct: 241 SRFFHGLTLVPSLILVLLLSLGYQVGSFLSHLLSLTIAVTALVNGFSIAKSLALMLLLTY 300

Query: 380 *NRPKV 363
            N+ KV
Sbjct: 301 SNKEKV 306


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 82  NHRQWKDSLLHSTYNDVREEAAQKEAGPVLPLKSLRNLDRARKTSSQKIK 231
           NH  +K    +           Q E  PV+PL  L  L+   KTS  +++
Sbjct: 157 NHNVYKSQAYYELTGAWLVVLRQLEDRPVVPLLPLEELEEHNKTSQNRME 206


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 363 NFRPISERRKRDSGLSAADVRALLNLWEAQERRKQEYANQFAADRYY 503
           ++ P+  R   D G    D  +  NLWE+      ++AN+     YY
Sbjct: 63  SYSPVLSRDAND-GYIPLDTSSRANLWESVTDYDLQHANEPLVGNYY 108


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 77  WRTTGNGRTRFC 112
           WRTT +G T FC
Sbjct: 857 WRTTSSGETSFC 868


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,140
Number of Sequences: 5004
Number of extensions: 38973
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)