Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1787X
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68106-9|CAE17838.1|  551|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z49207-10|CAE17907.1|  551|Caenorhabditis elegans Hypothetical p...    28   4.0  
U58764-1|AAB00723.2|  191|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z68106-9|CAE17838.1|  551|Caenorhabditis elegans Hypothetical
           protein F41E7.9 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 85  HRQWKDSLLHSTYNDVREEAAQKEAGPVLPLKSLRNLDRARKTSSQK--IKPLCHQSIYD 258
           H+Q +      + ND  +   + E  P+ PL+++RN +   ++S Q+   +P+ +Q  YD
Sbjct: 387 HQQQQHEYSQHSQNDSYDSYPESEE-PIRPLQNMRNSNSFSESSQQRPISRPIRNQPRYD 445


>Z49207-10|CAE17907.1|  551|Caenorhabditis elegans Hypothetical
           protein F41E7.9 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +1

Query: 85  HRQWKDSLLHSTYNDVREEAAQKEAGPVLPLKSLRNLDRARKTSSQK--IKPLCHQSIYD 258
           H+Q +      + ND  +   + E  P+ PL+++RN +   ++S Q+   +P+ +Q  YD
Sbjct: 387 HQQQQHEYSQHSQNDSYDSYPESEE-PIRPLQNMRNSNSFSESSQQRPISRPIRNQPRYD 445


>U58764-1|AAB00723.2|  191|Caenorhabditis elegans Hypothetical
           protein M03E7.4 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 116 ECRSESFHCRWFAIKFRPHDK 54
           EC  E +HCRW +  FR + K
Sbjct: 62  ECSEEFYHCRWQSDGFRTYRK 82


>Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical
           protein F58B3.7 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 206 EKPQARRSSRSVTNRFMTQHEAQRRKRGSGTKV 304
           ++ Q  +++R V  R   +HE + +KR  G  +
Sbjct: 131 DRKQREKTAREVAKRLQREHEEEDKKRSKGAAI 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,555
Number of Sequences: 27780
Number of extensions: 219454
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)