Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1787X
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   0.91 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 441 WEAQERRKQEYANQFA 488
           W+  E RKQ Y +QFA
Sbjct: 173 WQWNEERKQYYLHQFA 188


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -1

Query: 465 AFGVPELPKDS-TEL--ARQRRSNPSLVCVVLKSA*SSSYFHR 346
           AF V E PK   T +  AR R +  +L C  +K +    YF R
Sbjct: 660 AFLVLERPKTKLTGINDARLRNTMENLTCATVKGSAVDMYFRR 702


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 521 HLDLPTIISIGGELVCILLLSAFLSF 444
           H D P + + G EL  ILL    + +
Sbjct: 540 HRDTPVVRASGRELTIILLAGVLVCY 565


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 521 HLDLPTIISIGGELVCILLLSAFLSF 444
           H D P + + G EL  ILL    + +
Sbjct: 630 HRDTPVVRASGRELTIILLAGVLVCY 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,395
Number of Sequences: 438
Number of extensions: 2661
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)