Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1784X
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    29   3.5  
01_01_0377 + 2930913-2931530,2931646-2931753                           28   6.1  
03_05_0005 + 19470301-19471180,19471262-19471905,19472027-19472596     27   8.0  

>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 59  RSFFGTVNYHYY*FISKMQKQVPAKGKKRKANTNLVTSEPKNVK 190
           RS   T+NY+YY  IS       + G  +   T+   +EP   K
Sbjct: 684 RSLLATINYYYYFNISITSSMASSSGVVQPEETSKKMTEPSGQK 727


>01_01_0377 + 2930913-2931530,2931646-2931753
          Length = 241

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 228 MLFLLSELTKEFCFTFLGSDVTKFVFALRFLPLA 127
           M  L+    ++ CF   GSDV +F+  L  LP++
Sbjct: 8   MKLLIDTKAQKVCFAEAGSDVIEFISCLLCLPMS 41


>03_05_0005 + 19470301-19471180,19471262-19471905,19472027-19472596
          Length = 697

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 478 NGI*KETDSNGLKKKEKQA*KDTAQATC 561
           NG+ KE  SNGL  KE Q  K   Q  C
Sbjct: 394 NGLSKEAPSNGLADKEVQPEKTMPQEYC 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,982,331
Number of Sequences: 37544
Number of extensions: 139195
Number of successful extensions: 266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)