Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1783
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    62   8e-11
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.014
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    29   0.39 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.69 
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    29   0.69 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.1  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   2.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   3.7  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   6.4  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   8.5  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   8.5  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +3

Query: 297 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 467
           + K+  +SW PD A +K KM+YSSS D L+++  G+   IQATD SE + E V EK+
Sbjct: 78  RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 25/68 (36%), Positives = 37/68 (54%)
 Frame = +1

Query: 49  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 228
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60

Query: 229 ECRYGLFD 252
           +CRY ++D
Sbjct: 61  DCRYAIYD 68


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 291 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKK--SLVGVQKYIQATDLSEASQEAVEEK 464
           SKK  L L+S+ P+ A V++KMLY+SS  A  +  +L  + +   A+   E   + + + 
Sbjct: 76  SKKNLLQLISYVPENANVRRKMLYASSRAAFVRCVTLAKLDESYFASTPEELDYQQIMKS 135

Query: 465 LRATDRQ*TAFTHELRR 515
           L   + Q      EL R
Sbjct: 136 LSKQEDQSPLRQDELER 152



 Score = 29.9 bits (64), Expect = 0.30
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
 Frame = +3

Query: 303 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 467
           K+  +  CP  A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +    
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEILHAA 303

Query: 468 RATDRQ*TAFTHELRRNRTRSP 533
             +  Q    T +   +R R P
Sbjct: 304 GISSPQAETSTTKTGFSRPRPP 325


>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 458
           T++      LF++ W P        M+Y+S+     + +  V K  +A D  + + EAV+
Sbjct: 79  TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137

Query: 459 EKL 467
           E L
Sbjct: 138 EFL 140


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 21/80 (26%), Positives = 32/80 (40%)
 Frame = +3

Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 458
           T  A+K     +    P T    K  + ++   A KK + G +KY    + S    +  E
Sbjct: 130 TGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVINDSNVENKE-E 188

Query: 459 EKLRATDRQ*TAFTHELRRN 518
            K R  DR  + FT    +N
Sbjct: 189 TKDRNLDRALSKFTQSREKN 208


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 536 CRRAGSVSSQLVCKCCLLAIG 474
           C R G +SS  +CK C+L  G
Sbjct: 287 CERCGFISSNRICKACMLLEG 307


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = -1

Query: 334  VSGHHDIRKSFCFLLASDVPW----HWCVYSSQTGHIC-IPR-YRP 215
            + G  ++    C L AS   W    HWC + ++TG +C  PR Y P
Sbjct: 1761 IPGVIELSNHLC-LTASSTEWSLIKHWCNFFTETGPLCDFPRAYYP 1805


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 369 SFDALKKSLVGVQKYIQATDLSEASQ 446
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 464 APRHRSPINSIYTRAATKPNPLSDTP 541
           APR R P  ++ T A  +P P+S  P
Sbjct: 24  APRKREPARTVSTPAFMEPAPVSKKP 49


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 478 IANKQHLHTSCDETEPALRHSCPDDTRPRHH*PLSIITKET 600
           ++ K   + S    EP +RHS     RP+ H   S +T+++
Sbjct: 39  LSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 58  TVSDACKTTYEEIKKDKKHRYV 123
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 55  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 159
           VT  D  KT  +  +K  KH+ V  YIR  K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,743
Number of Sequences: 5004
Number of extensions: 40199
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)