Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1783
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 68 7e-12
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 64 8e-11
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 64 1e-10
05_01_0103 + 686770-687017,687120-687270 61 8e-10
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 57 9e-09
03_06_0479 + 34217170-34217172,34217337-34217786 56 2e-08
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 56 2e-08
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 54 7e-08
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 45 4e-05
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 38 0.005
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455... 29 2.2
04_04_1411 + 33375988-33376045,33376161-33376551,33376830-333769... 29 2.8
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 29 2.8
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 28 5.0
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 27 8.7
04_01_0439 + 5740472-5740836,5743693-5743939 27 8.7
02_04_0192 + 20795659-20796309 27 8.7
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 27 8.7
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 67.7 bits (158), Expect = 7e-12
Identities = 30/62 (48%), Positives = 43/62 (69%)
Frame = +3
Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 458
T E +K K+F +SW PDT++V+ KMLY+SS D K+ L G+Q +QATD SE S + V+
Sbjct: 95 TDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVK 154
Query: 459 EK 464
+
Sbjct: 155 SR 156
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 46 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 222
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G+ Y+ F L
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLP--- 80
Query: 223 TGECRYGLFD 252
ECRY +FD
Sbjct: 81 ADECRYAVFD 90
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +3
Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 458
T+E K ++F + W PD AKV+ KMLY+SS + KK L G+Q +QATD E S +A++
Sbjct: 95 TAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALK 154
Query: 459 EKLR 470
++++
Sbjct: 155 DRVK 158
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 46 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 222
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G+R YE F L +
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPE-- 81
Query: 223 TGECRYGLFD 252
G+CR+ ++D
Sbjct: 82 -GDCRFAIYD 90
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = +3
Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 458
T E +K K+F SW PDTA+ + KMLY+SS D ++ L G+Q IQATD SE S + +
Sbjct: 82 TDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIIR 141
Query: 459 EK 464
+
Sbjct: 142 AR 143
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +1
Query: 52 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTG 228
G+ V+D CK ++E+K + R++VF I D+ +I VE +G+ YE F L
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATLP---AD 69
Query: 229 ECRYGLFD 252
ECRY ++D
Sbjct: 70 ECRYAVYD 77
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 60.9 bits (141), Expect = 8e-10
Identities = 25/59 (42%), Positives = 40/59 (67%)
Frame = +3
Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAV 455
T E +K K+F ++W PDT++V+ KM+Y+SS D K+ L G+Q +QATD +E + +
Sbjct: 69 TEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVI 127
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 55 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDLQKGGTGE 231
+ V D CK + E+K + +R++++ I ++K+ + VE VGE Y+ F L E
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLP---ANE 57
Query: 232 CRYGLFD 252
CRY +FD
Sbjct: 58 CRYAIFD 64
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 57.2 bits (132), Expect = 9e-09
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 46 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 222
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G ++ F++ L +
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPE-- 68
Query: 223 TGECRYGLFD 252
+CRY ++D
Sbjct: 69 -SDCRYAIYD 77
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 458
T E +K K+F ++W P ++++ KMLY++S + ++ L GV IQATD SE E +
Sbjct: 82 TEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLR 141
Query: 459 EK 464
E+
Sbjct: 142 ER 143
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGT 225
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +++ L G
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADG- 64
Query: 226 GECRYGLFD 252
CRY ++D
Sbjct: 65 --CRYAVYD 71
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +3
Query: 276 GTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAV 455
G + + K+F +SW P A V+ KM+Y+SS + KK L GVQ +QATD SE + + +
Sbjct: 86 GEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVL 145
Query: 456 EE 461
++
Sbjct: 146 KD 147
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = +3
Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQ 446
T E +K K+F ++W P T++++ KMLYS+S D +K+ L G IQATD +E Q
Sbjct: 82 TGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTETPQ 137
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3
Query: 279 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 407
T E +K K+F +SW PDT+KV+ KMLY+SS D K+ L G+Q
Sbjct: 340 TDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQ 382
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 46 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 222
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G+ Y+ F +
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMP--- 325
Query: 223 TGECRYGLFD 252
ECRY +FD
Sbjct: 326 ASECRYAVFD 335
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 55 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDLQKGGTGE 231
+ V + K+ + E+K+ K HRYV+F I D + +I VE G Y+ F L +
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLP---ADD 76
Query: 232 CRYGLFD 252
CRY ++D
Sbjct: 77 CRYAVYD 83
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 294 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRA 473
+K K+F +SW P ++++ K +Y+ S + + L GV IQATD + E + +
Sbjct: 93 RKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRANR 152
Query: 474 T 476
T
Sbjct: 153 T 153
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 294 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRA 473
+K K+F +SW P + ++ K +Y+ + + L GV IQATD + E + +
Sbjct: 109 RKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRANR 168
Query: 474 T 476
T
Sbjct: 169 T 169
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 55 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 210
+ V + K+ + E+ + K HRYV+F I D + +I VE G Y+ F L
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASL 92
>07_03_0356 -
17142019-17142899,17145251-17145290,17145381-17145512,
17145762-17145815,17145913-17145993,17146860-17146955,
17147439-17147611,17147750-17147823,17148515-17148622,
17148693-17148868,17149305-17149352,17150665-17150775,
17152172-17152226,17153434-17153534,17154176-17154290,
17155505-17155698
Length = 812
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 398 RSSEVHPSDRPLGSVSGGRRRKAPRHRSPINSI 496
R E P R G+ +GGRRRKA +R + I
Sbjct: 11 RGGESPPPPRTRGASAGGRRRKAEAYREVLRRI 43
>04_04_1411 +
33375988-33376045,33376161-33376551,33376830-33376912,
33377209-33377297,33377481-33377554,33377768-33377818,
33377861-33377900,33378567-33378593,33379191-33379874
Length = 498
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 419 SDRPLGSVSGGRRRKAPRHRSPINSIYTRAATKPNPLSDTPALT 550
S+ P+GS++G R KA +P +S AAT+ N P T
Sbjct: 319 SNLPIGSMAGNRSTKAGLELAPSSSADAIAATEANHTGVAPPST 362
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 493 HLHTSCDETEPALRHSCPDDTRP-RHH*PLSIITKET 600
H H SC ++PALR D +P RH P S I T
Sbjct: 15 HRHASCRPSQPALRSLNQDPPKPARHTGPRSHIAVRT 51
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 82 TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 228
T +++ +D+ + ++ EK D E + E NA YE+ + L+ G G
Sbjct: 140 TKQKVAEDENRNLIDRWML-EKMKDAERLNEANAMYEEMVLKLKSAGVG 187
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 91 LRKWSCKRPKLSHQTP 44
L +W C RPK H TP
Sbjct: 54 LEEWQCARPKTRHPTP 69
>04_01_0439 + 5740472-5740836,5743693-5743939
Length = 203
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 422 DRPLGSVSGGRRRKAPRHRSPINSIYTRAATKPN 523
DR G G+RR+A R + + AAT+PN
Sbjct: 50 DRDEGGDGRGKRRRASRATAAVRRTQQMAATEPN 83
>02_04_0192 + 20795659-20796309
Length = 216
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 386 KVPCRSSEVHPSDRPLGSVSGGRR-RKAPRHRSPINSIYTRAATKPNPLSDTPA 544
K P RSS P G V GG+ AP P S+ +RAA+ P + PA
Sbjct: 90 KTPARSSRSSSKQPPPGVVGGGKHYPSAPPLPLP-PSLLSRAASDPYASAVVPA 142
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +2
Query: 401 SSEVHPSDRPLGSVSGGR----RR--KAPRHRSPINSIYTRA 508
SS PS RPLG GGR RR +APR R + + RA
Sbjct: 31 SSSSLPSPRPLGGACGGRPQHGRRSLRAPRRRGGGDRVAARA 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,217
Number of Sequences: 37544
Number of extensions: 303210
Number of successful extensions: 1175
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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