Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1783
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       61   7e-10
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    61   7e-10
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    48   7e-06
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       47   9e-06
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    47   9e-06
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    34   0.067
AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    29   2.5  
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical ...    29   3.3  
U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily as...    28   5.9  
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass...    28   5.9  
U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily ass...    28   5.9  
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
 Frame = +1

Query: 43  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 216
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 217 -GGTGECRYGLFD 252
                ECRY   D
Sbjct: 61  VEDGKECRYAAVD 73



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
 Frame = +3

Query: 252 LEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQAT 425
           +E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK SL G++    +QA+
Sbjct: 74  VEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQAS 132

Query: 426 DLSEASQEAVEEKLRATDR 482
           ++S+  +++V+  L +  R
Sbjct: 133 EMSDLDEKSVKSDLMSNQR 151


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
 Frame = +1

Query: 43  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 216
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 217 -GGTGECRYGLFD 252
                ECRY   D
Sbjct: 61  VEDGKECRYAAVD 73



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
 Frame = +3

Query: 252 LEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQAT 425
           +E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK SL G++    +QA+
Sbjct: 74  VEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQAS 132

Query: 426 DLSEASQEAVEEKLRATDR 482
           ++S+  +++V+  L +  R
Sbjct: 133 EMSDLDEKSVKSDLMSNQR 151


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +3

Query: 267 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 440
           Q    SE S K+   L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+ 
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197

Query: 441 SQEAVEEKLRATDR 482
            +++V+  L +  R
Sbjct: 198 DEKSVKSDLMSNQR 211



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 291 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 449
           SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE S +
Sbjct: 99  SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152



 Score = 35.1 bits (77), Expect = 0.039
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
 Frame = +1

Query: 43  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GER 177
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 178 NAEYEQFLEDLQK--GGTGECRYGLFD 252
            A +++F+ED++       +CRY +FD
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFD 86


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +3

Query: 291 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 467
           SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE S + +  KL
Sbjct: 99  SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158



 Score = 35.1 bits (77), Expect = 0.039
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
 Frame = +1

Query: 43  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GER 177
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 178 NAEYEQFLEDLQK--GGTGECRYGLFD 252
            A +++F+ED++       +CRY +FD
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFD 86


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +3

Query: 291 SKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 467
           SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q +D SE S + +  KL
Sbjct: 99  SKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158



 Score = 35.1 bits (77), Expect = 0.039
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
 Frame = +1

Query: 43  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETV--------------GER 177
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE                   
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 178 NAEYEQFLEDLQK--GGTGECRYGLFD 252
            A +++F+ED++       +CRY +FD
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFD 86


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 201 RGSAEGRYRGMQIWPV*LE-YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 362
           R    G+Y G + +P  L  + H   G+ E    + +F  S  PD+ K KKK+LY
Sbjct: 141 RPKVNGKYEGAEEYPDELAVFIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 270 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 449
           C+  S+      + L+ +CP+ +  + +MLY+ S + +      V K  +  D+ E   E
Sbjct: 74  CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132

Query: 450 AVEEK 464
            +E K
Sbjct: 133 LLESK 137


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 248 NRPYLHSPVPPFCRSSRNCSYSALRSPTVST 156
           N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 191 NIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 248 NRPYLHSPVPPFCRSSRNCSYSALRSPTVST 156
           N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 191 NIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical
           protein F29C4.6 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 536 CRRAGSVSSQLVCKCCLLAIG 474
           C R G ++SQ +CK CLL  G
Sbjct: 289 CERCGYMTSQKLCKACLLIEG 309


>U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform d protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 480 DRWRGAFLRRPPETLPRGRSLGCTSELRQGT 388
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform a protein.
          Length = 1112

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 480 DRWRGAFLRRPPETLPRGRSLGCTSELRQGT 388
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform c protein.
          Length = 949

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 480 DRWRGAFLRRPPETLPRGRSLGCTSELRQGT 388
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
           protein K04D7.5b protein.
          Length = 1287

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 485 INSIYTRAATKPNPLSDTPALTTRGHDTTS 574
           IN+  T    +P P+SD P L T  H TT+
Sbjct: 777 INNQETSKFPRPLPMSDQPTLNTSCHITTT 806


>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
           protein K04D7.5a protein.
          Length = 1338

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 485 INSIYTRAATKPNPLSDTPALTTRGHDTTS 574
           IN+  T    +P P+SD P L T  H TT+
Sbjct: 777 INNQETSKFPRPLPMSDQPTLNTSCHITTT 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,587
Number of Sequences: 27780
Number of extensions: 242355
Number of successful extensions: 846
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)