Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1783
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 252 LEYTHQCQGTSEASKKQKLFLMSWCP 329
           L Y H+   T E S+  K+  + W P
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWLP 341


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 218 PFCRSSRNCSYSALR 174
           P+CR + +C YS  R
Sbjct: 9   PYCRRNFSCYYSLKR 23


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 419 SDRPLGSVSGGRRRKAPRHRSPINSIYTRAATKPNP 526
           SDRP  S S         H S  N +       P P
Sbjct: 270 SDRPPASASSNEHEAESEHTSTPNFLSEAKIFPPTP 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,354
Number of Sequences: 438
Number of extensions: 3010
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)