Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1782X
(330 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 67 2e-12
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 67 2e-12
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 41 2e-04
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 41 2e-04
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 41 2e-04
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 29 0.60
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 29 0.60
AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical ... 26 7.3
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 26 7.3
AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek (dictyos... 26 7.3
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 26 7.3
Z48009-11|CAA88088.2| 467|Caenorhabditis elegans Hypothetical p... 25 9.7
U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical p... 25 9.7
AF143148-1|AAD37914.1| 315|Caenorhabditis elegans R151.8B prote... 25 9.7
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Frame = +3
Query: 27 MASGVTVSDACKTTYEEIKNDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 200
MASGV V +CK Y+ + N +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 201 -GGTGECRYGLFDFEYTHQ 254
ECRY D E T Q
Sbjct: 61 VEDGKECRYAAVDVEVTVQ 79
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Frame = +3
Query: 27 MASGVTVSDACKTTYEEIKNDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 200
MASGV V +CK Y+ + N +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 201 -GGTGECRYGLFDFEYTHQ 254
ECRY D E T Q
Sbjct: 61 VEDGKECRYAAVDVEVTVQ 79
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
Frame = +3
Query: 27 MASGVTVSDACKTTYEEIKNDKK-HRYVVFYIRDEKQIDVETVGERN------------- 164
M+SGV V +T+++++ +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 165 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 248
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
Frame = +3
Query: 27 MASGVTVSDACKTTYEEIKNDKK-HRYVVFYIRDEKQIDVETVGERN------------- 164
M+SGV V +T+++++ +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 165 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 248
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 17/91 (18%)
Frame = +3
Query: 27 MASGVTVSDACKTTYEEIKNDKK-HRYVVFYIRDEKQIDVETVGERN------------- 164
M+SGV V +T+++++ +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 165 -AEYEQFLEDLQK--GGTGECRYGLFDFEYT 248
A +++F+ED++ +CRY +FDF++T
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFT 90
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 241 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 140
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 241 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 140
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>AF039052-2|AAF98629.1| 400|Caenorhabditis elegans Hypothetical
protein T22D1.8 protein.
Length = 400
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 250 CVYSKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVSTS 137
C+Y++S L PV CRS+R + +R P+VST+
Sbjct: 286 CLYTRSRS--LSIPVYS-CRSARYAACMDIRDPSVSTT 320
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 21 QKMASGVTVSDACKTTYEEIKNDKKHRYVV 110
+K + + CK TY KN K+HR V
Sbjct: 1137 RKASQQAYICPECKKTYASRKNVKRHRMAV 1166
>AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform c protein.
Length = 536
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 39 VTVSDACKTTYEEIKNDKKHRYVVFYIRDEKQIDVETVGERNAE 170
V + D +T E + ++ + VV DEKQ+D E V + E
Sbjct: 61 VKLEDETETEVESVDGGQEEKEVV----DEKQVDAERVNTKTEE 100
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 39 VTVSDACKTTYEEIKNDKKHRYVVFYIRDEKQIDVETVGERNAE 170
V + D +T E + ++ + VV DEKQ+D E V + E
Sbjct: 61 VKLEDETETEVESVDGGQEEKEVV----DEKQVDAERVNTKTEE 100
>Z48009-11|CAA88088.2| 467|Caenorhabditis elegans Hypothetical
protein AH6.5 protein.
Length = 467
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 117 IRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTH 251
+++ + D+ T N + ++ +GG+G C YGL E+ H
Sbjct: 301 LKELRASDIPTRYPNNKYKTKLCKNFARGGSGVCPYGL-RCEFVH 344
>U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical
protein R151.8 protein.
Length = 731
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 299 SGRASVSC*PPTCPGLVRVFKVKQ 228
+GR V+ P CP L R F VK+
Sbjct: 197 AGRKLVTIKTPPCPALCRYFSVKK 220
>AF143148-1|AAD37914.1| 315|Caenorhabditis elegans R151.8B protein
protein.
Length = 315
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 299 SGRASVSC*PPTCPGLVRVFKVKQ 228
+GR V+ P CP L R F VK+
Sbjct: 197 AGRKLVTIKTPPCPALCRYFSVKK 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,480,261
Number of Sequences: 27780
Number of extensions: 135255
Number of successful extensions: 476
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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