Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1781
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    29   0.65 
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    29   0.86 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.5  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    27   2.6  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    27   3.5  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    26   6.0  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    25   8.0  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   8.0  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +3

Query: 276 GKISLNFTKAKEFNDKNVKKSPAGF--GTFGRTPIQEQKEIEEIADDLESQHVEQVMGIK 449
           GKI+      +E NDK V K P+GF  G  G   I    E+ +  +   S   ++++ + 
Sbjct: 574 GKITEKIVYGQELNDKKVAK-PSGFRAGYMGHLTIIAD-EVVKFVEHYSSTFDQELLNLI 631

Query: 450 NFGKKAKNFNLDELVE 497
           N  +K +NF    LVE
Sbjct: 632 N-DEKWQNFVNKTLVE 646


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 297 TKAKEFNDKNVKKSPAGFGTFGRTPIQEQKEIEEIADDLESQHVEQVMGIKNFGKKA 467
           TK K   +K  K+S          PI  Q +I    DD E  H+E+++GIK+  K A
Sbjct: 83  TKKKSSQNKQAKESKL------LDPIAFQHKIALEEDDREIAHLEKMLGIKSKDKSA 133


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 366 TPIQEQKEIEEIADDLESQHVEQVMGIKNFGKKAKNFNLD 485
           T  Q QK+ +++ D L + HV QV  +  +G  A+  N++
Sbjct: 420 TSSQSQKQAQDVKDTLNTSHVVQVR-LPPYGDNARFCNIE 458


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +3

Query: 246 SENSKKPISFGKISLNFTKAKEFNDKNV-KKSPAGFGTFGRTPIQEQK-EIEE--IADDL 413
           S+  KK +   +++L   + K  N  +V  +  A       TP+ E+K E+EE  IA+D+
Sbjct: 89  SKTLKKHLEAYELALKEKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKDELEEERIAEDI 148

Query: 414 ESQHVEQ 434
               VEQ
Sbjct: 149 AQNEVEQ 155


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 456 GKKAKNFNLDELVEQAKKLHKKPTKRGWKRN*MLIEIHLLMTRLAILLGPH 608
           G  +KN  L   +  A KL    T+ G K+N ++I    +   LA++L  H
Sbjct: 273 GLDSKNVYLLRSIADASKLAAVTTEAGDKKNIVIIGSSFIGLELAVVLKDH 323


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = -3

Query: 458 TKVFNAHDLFYVLAL*IVGDFFNFFLFLYRSSTKGSKS-CWRFLYIFIIKFLCFSKI*TY 282
           T +    D F   A  + G +    L L      G K  CW    IFI  F+      ++
Sbjct: 163 TPITEKLDYFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVIFIAAFIAHVSYLSF 222

Query: 281 FTERYG 264
           ++  YG
Sbjct: 223 YSFDYG 228


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 545 ELNADRNSSSDDQVGNTIGPTLANV 619
           E+N D   S DD    T+G TL  +
Sbjct: 97  EINLDETDSKDDFTAGTLGDTLGTL 121


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 42  SEL*KIYFSAVCKINKKNYNQTFVYKIVK 128
           S L K  FS V     +N NQTF  KI++
Sbjct: 163 SNLGKGMFSTVVSALDRNRNQTFAIKIIR 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,043
Number of Sequences: 5004
Number of extensions: 46530
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)