Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1781
         (706 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113366-1|AAM29371.1|  655|Drosophila melanogaster LD24649p pro...    60   2e-09
AY058624-1|AAL13853.1|  655|Drosophila melanogaster LD31556p pro...    60   2e-09
AE013599-3690|AAF47065.1|  655|Drosophila melanogaster CG5543-PA...    60   2e-09

>AY113366-1|AAM29371.1|  655|Drosophila melanogaster LD24649p
           protein.
          Length = 655

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 11/91 (12%)
 Frame = +3

Query: 267 ISFGKISLNFT------KAKEFNDKNVKKSPAGFGTFG--RTPIQEQ--KEIEEIADDLE 416
           ISFGKI LN        ++ E   ++ K+S    G  G  +   +EQ  ++IE++A+DLE
Sbjct: 6   ISFGKIKLNVNVPPAEPRSNETEAEDAKESTEASGNGGGFKKMDKEQMIRQIEDVAEDLE 65

Query: 417 SQHVEQVMGIKNFGKK-AKNFNLDELVEQAK 506
           SQH+++VMGI  FG+K AK F+++E +E+A+
Sbjct: 66  SQHLKEVMGISGFGRKAAKVFDINEQIEKAR 96


>AY058624-1|AAL13853.1|  655|Drosophila melanogaster LD31556p
           protein.
          Length = 655

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 11/91 (12%)
 Frame = +3

Query: 267 ISFGKISLNFT------KAKEFNDKNVKKSPAGFGTFG--RTPIQEQ--KEIEEIADDLE 416
           ISFGKI LN        ++ E   ++ K+S    G  G  +   +EQ  ++IE++A+DLE
Sbjct: 6   ISFGKIKLNVNVPPAEPRSNETEAEDAKESTEASGNGGGFKKMDKEQMIRQIEDVAEDLE 65

Query: 417 SQHVEQVMGIKNFGKK-AKNFNLDELVEQAK 506
           SQH+++VMGI  FG+K AK F+++E +E+A+
Sbjct: 66  SQHLKEVMGISGFGRKAAKVFDINEQIEKAR 96


>AE013599-3690|AAF47065.1|  655|Drosophila melanogaster CG5543-PA
           protein.
          Length = 655

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 11/91 (12%)
 Frame = +3

Query: 267 ISFGKISLNFT------KAKEFNDKNVKKSPAGFGTFG--RTPIQEQ--KEIEEIADDLE 416
           ISFGKI LN        ++ E   ++ K+S    G  G  +   +EQ  ++IE++A+DLE
Sbjct: 6   ISFGKIKLNVNVPPAEPRSNETEAEDAKESTEASGNGGGFKKMDKEQMIRQIEDVAEDLE 65

Query: 417 SQHVEQVMGIKNFGKK-AKNFNLDELVEQAK 506
           SQH+++VMGI  FG+K AK F+++E +E+A+
Sbjct: 66  SQHLKEVMGISGFGRKAAKVFDINEQIEKAR 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,846,022
Number of Sequences: 53049
Number of extensions: 463510
Number of successful extensions: 1466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)