Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1781
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF003389-9|AAC71134.1|  282|Caenorhabditis elegans Hypothetical ...    28   5.7  
U29244-11|AAC71092.1|  201|Caenorhabditis elegans Hypothetical p...    28   7.5  

>Z83113-3|CAB05545.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.6 protein.
          Length = 479

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 425 VLAL*IVGDFFNFFLFLYRSSTKGSKSCWRFLYIFIIKFLCFS 297
           +L L ++  F    +FLY  STK S   W FL +F++    FS
Sbjct: 350 LLVLALINIFMMSLVFLY-DSTKDSFLAWPFLALFVLFTFVFS 391


>AF003389-9|AAC71134.1|  282|Caenorhabditis elegans Hypothetical
           protein F23H11.6 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -2

Query: 627 FWSTLANVGPIVLPT-----WSSEDEFLSAFNSASNL 532
           FW+ L  + PIVLPT     W+S  +F + F+   NL
Sbjct: 56  FWNNLPTIPPIVLPTINPDFWASLKKFDTLFHIFYNL 92


>U29244-11|AAC71092.1|  201|Caenorhabditis elegans Hypothetical
           protein ZK1248.11 protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +3

Query: 315 NDKNVKKSPAGFGTFGRTPIQEQKEIEEI-ADDLESQHVEQVM--GIKNFGKKAKNFN-L 482
           N KN   +      F  T +++  ++ E+  +  + QH+ + +   +K+   +  N   L
Sbjct: 27  NSKNAISNEVDSEEFKETLMKDAMKLMELETEGAQMQHIFEALHNDLKDGSDEVPNEKAL 86

Query: 483 DELVEQAKKLHK 518
           +EL E+AKK HK
Sbjct: 87  EELYEKAKKTHK 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,221
Number of Sequences: 27780
Number of extensions: 259698
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)