Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1780X
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    30   0.25 
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    27   2.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.3  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   9.4  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.4  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 57  VRDVNDFFEQETSFLQEYYSHLKEAVAK 140
           V DV+D  + E +F Q YYSHL + VAK
Sbjct: 355 VSDVDDDEDDENAFSQNYYSHL-QMVAK 381


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +3

Query: 126 EAVAKVDRMTSKHKEVADAHIKLSSCITQLATR 224
           E+  K D + +++KE++D+ + +S+  TQL+ +
Sbjct: 154 ESAKKTDEVKARYKEISDSLVAVSAEKTQLSEK 186


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 436 LLQVPVGCFVGS*TPESPHEQRFRCVSVSHVVPES 332
           LL V   CF  S +    HE R + V+V+H +  S
Sbjct: 279 LLHVDFDCFFASVSTRFSHELRLKPVAVAHGIKNS 313


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 206 NSARDQRAASHGEVPHEASE 265
           NS   Q +A H  VPH +S+
Sbjct: 128 NSTTSQASAKHSAVPHRSSQ 147


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -3

Query: 215 ELSYARRQLDVSVRHFFVLRRHTVDFSDCLLEVRVVFLQKRRLLLEEVVHVSHGRPEVYL 36
           E  +  + +D++ +   VL R + DF  C+LE R +      L   +  + +  R  + L
Sbjct: 469 ERMFDMQYIDIAEQALGVLERLSKDFGICILEHRGML---AALQYFDFFYTTVQRTAISL 525

Query: 35  ISGCC 21
            + CC
Sbjct: 526 AANCC 530


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 36   EIYLGATVRDVNDFFEQETSFLQEYY 113
            + YL    R + DF +   S+L  YY
Sbjct: 1799 DTYLKRKFRSIKDFLKHTVSYLYSYY 1824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,410
Number of Sequences: 5004
Number of extensions: 32630
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)