Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1780X
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0057 + 797732-797793,797819-797914,798816-799012,799730-80... 30 1.3
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 29 2.4
01_01_0049 - 373980-374148,374407-374451,375003-375149,375647-37... 29 2.4
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 28 4.1
08_02_1619 - 28283250-28285238 27 7.2
03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268 27 7.2
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 27 9.5
01_07_0046 - 40714701-40714763,40715266-40715343,40716398-407164... 27 9.5
>10_01_0057 +
797732-797793,797819-797914,798816-799012,799730-800892
Length = 505
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 350 SCSTGECPPASGPGRTPCDPRFSGTCQMS 264
SC TG P GP + C+P+F Q++
Sbjct: 89 SCHTGYQPSGGGPKKQECNPKFPVAAQLA 117
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +3
Query: 6 LVRSMTTTTDEIYLGAT--VRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVAD 179
+ + + + ++ LG V + + +E+ +++ E +HL EA + R+ +H+E+
Sbjct: 160 MFKDVQSKVSDVVLGKEKPVEESSPEYEKLKNYIFELENHLAEAQKQAFRLVKRHRELGQ 219
Query: 180 AHIKLSSCITQLATREQPPMER 245
+ I L E +E+
Sbjct: 220 SLADFGKAIKLLGACEGDSLEK 241
>01_01_0049 -
373980-374148,374407-374451,375003-375149,375647-375768,
375938-376042,376123-376234,376314-376381,376617-376766,
377471-377533,377616-377741,377841-377963,378206-378387,
379398-379488
Length = 500
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 380 RAALSLRERLSCSTGECPPASGPGRTPCDP 291
R A+SLR R CS + PP + PGR +P
Sbjct: 40 RRAVSLR-RTCCSMQQAPPPAWPGRAVVEP 68
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 48 GATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G V+ DFFE+E F +E + E ++S H ADA
Sbjct: 494 GDVVQAATDFFEKERDFFEEANVYNSETPKSEIDLSSDHGSSADA 538
>08_02_1619 - 28283250-28285238
Length = 662
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -1
Query: 436 LLQVPVGCFVGS*TPESPHEQRFRCVSVSHVVPESVRQLQVLVGRHATLDFPALVK 269
L+ VG G PE + R RC + V + L++L+GR A+ + PA+VK
Sbjct: 520 LVAAAVGKADGYRAPEL--QSRGRCSPRTDVYAFGILLLELLMGRKASGELPAVVK 573
>03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268
Length = 574
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 188 QAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMA 304
+A V+H D+ A HG V + +ET+ +CR++ +A
Sbjct: 35 RAAVVHP---DRAAVVHGPVRYTWAETYRRCRRLASALA 70
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 152 DVEAQRSGGRSHQAVVLHNSARDQ 223
DV+A RSG ++ A LHNS +Q
Sbjct: 267 DVDASRSGAQNVGATSLHNSTSNQ 290
>01_07_0046 -
40714701-40714763,40715266-40715343,40716398-40716462,
40717075-40717201,40717279-40717319,40717621-40717690,
40718070-40718191,40719047-40719107,40719182-40719292,
40719387-40719461,40719815-40719842,40719929-40719978,
40720228-40720290,40720385-40720426,40720562-40720631,
40720663-40720713,40721857-40722041,40722374-40722775
Length = 567
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 198 SCITQLATREQPPMERFLTRPPRHL--TSAGKSRVAWRPTRT 317
S + + A P + R + PP + TSAG+ VA RPT T
Sbjct: 122 SLLGRTARSPSPALGRNIVEPPPTVRSTSAGRPAVASRPTTT 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,363
Number of Sequences: 37544
Number of extensions: 271626
Number of successful extensions: 970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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