Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1780X
(535 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093980-1|AAH93980.1| 404|Homo sapiens sorting nexin 5 protein. 74 4e-13
BC093623-1|AAH93623.1| 404|Homo sapiens sorting nexin 5 protein. 74 4e-13
BC062638-1|AAH62638.1| 412|Homo sapiens SNX5 protein protein. 74 4e-13
AL121585-3|CAI14858.1| 269|Homo sapiens sorting nexin 5 protein. 74 4e-13
AL121585-2|CAC00471.1| 404|Homo sapiens sorting nexin 5 protein. 74 4e-13
AK223308-1|BAD97028.1| 404|Homo sapiens sorting nexin 5 variant... 74 4e-13
AK001793-1|BAA91914.1| 404|Homo sapiens protein ( Homo sapiens ... 74 4e-13
AF121855-1|AAD27828.1| 404|Homo sapiens sorting nexin 5 protein. 74 4e-13
U83194-1|AAD24202.1| 410|Homo sapiens TRAF4-associated factor 2... 71 2e-12
BC001798-1|AAH01798.1| 290|Homo sapiens SNX6 protein protein. 71 2e-12
AF121856-1|AAD27829.1| 406|Homo sapiens sorting nexin 6 protein. 71 2e-12
AF109364-1|AAQ13512.1| 216|Homo sapiens MSTP010 protein. 71 2e-12
AL121585-4|CAI14859.1| 228|Homo sapiens sorting nexin 5 protein. 71 3e-12
BC045563-1|AAH45563.1| 403|Homo sapiens hypothetical protein FL... 69 8e-12
BC040981-1|AAH40981.1| 403|Homo sapiens hypothetical protein FL... 68 2e-11
AK055496-1|BAB70935.1| 277|Homo sapiens protein ( Homo sapiens ... 45 1e-04
Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain prot... 35 0.16
S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain prot... 35 0.16
AF521017-1|AAM74201.1| 472|Homo sapiens SOCIUS protein isoform ... 33 0.84
AF520989-1|AAM76060.1| 472|Homo sapiens unknown protein. 33 0.84
BC115378-1|AAI15379.1| 875|Homo sapiens coiled-coil domain cont... 31 3.4
AK129847-1|BAC85242.1| 875|Homo sapiens protein ( Homo sapiens ... 31 3.4
L76191-1|AAC41949.1| 712|Homo sapiens interleukin-1 receptor-as... 30 4.5
DQ054788-1|AAY88246.1| 633|Homo sapiens interleukin-1 receptor ... 30 4.5
BC054000-1|AAH54000.1| 693|Homo sapiens IRAK1 protein protein. 30 4.5
BC014963-1|AAH14963.1| 633|Homo sapiens interleukin-1 receptor-... 30 4.5
AF346607-1|AAK62888.1| 682|Homo sapiens interleukin-1 receptor ... 30 4.5
AF030876-1|AAC08756.1| 712|Homo sapiens Interleukin 1 receptor-... 30 4.5
X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain pro... 30 5.9
U93567-1|AAC51266.1| 338|Homo sapiens p40 protein. 30 5.9
U93571-1|AAC51274.1| 337|Homo sapiens p40 protein. 29 7.8
U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein. 29 7.8
U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protei... 29 7.8
D38024-1|BAA07227.1| 853|Homo sapiens facioscapulohumeral muscu... 29 7.8
AY834276-1|AAV97884.1| 1042|Homo sapiens mitogen-activated prote... 29 7.8
AY212247-1|AAO32626.1| 1239|Homo sapiens Ste20 group protein kin... 29 7.8
AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F, 3... 29 7.8
AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F, 3... 29 7.8
AC005035-1|AAY14969.1| 1260|Homo sapiens unknown protein. 29 7.8
>BC093980-1|AAH93980.1| 404|Homo sapiens sorting nexin 5 protein.
Length = 404
Score = 73.7 bits (173), Expect = 4e-13
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 185 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 243
Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
+I ++C+ LA E ++++L +
Sbjct: 244 YIHTAACLHSLALEEPTVIKKYLLK 268
Score = 65.7 bits (153), Expect = 1e-10
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +2
Query: 185 HQAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXX 364
H A LH+ A ++ + + +E F+K RK+EGR++SD+DLKL + LRYYM +
Sbjct: 246 HTAACLHSLALEEPTVIKKYLL-KVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEA 304
Query: 365 XXXXXXXXXXXXXXYEAANRNLEKARAKNKDV 460
YE +N+ L+KAR K+KDV
Sbjct: 305 AKDLLYRRTKALIDYENSNKALDKARLKSKDV 336
>BC093623-1|AAH93623.1| 404|Homo sapiens sorting nexin 5 protein.
Length = 404
Score = 73.7 bits (173), Expect = 4e-13
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 185 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 243
Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
+I ++C+ LA E ++++L +
Sbjct: 244 YIHTAACLHSLALEEPTVIKKYLLK 268
Score = 65.7 bits (153), Expect = 1e-10
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +2
Query: 185 HQAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXX 364
H A LH+ A ++ + + +E F+K RK+EGR++SD+DLKL + LRYYM +
Sbjct: 246 HTAACLHSLALEEPTVIKKYLL-KVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEA 304
Query: 365 XXXXXXXXXXXXXXYEAANRNLEKARAKNKDV 460
YE +N+ L+KAR K+KDV
Sbjct: 305 AKDLLYRRTKALIDYENSNKALDKARLKSKDV 336
>BC062638-1|AAH62638.1| 412|Homo sapiens SNX5 protein protein.
Length = 412
Score = 73.7 bits (173), Expect = 4e-13
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 193 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 251
Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
+I ++C+ LA E ++++L +
Sbjct: 252 YIHTAACLHSLALEEPTVIKKYLLK 276
Score = 65.7 bits (153), Expect = 1e-10
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +2
Query: 185 HQAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXX 364
H A LH+ A ++ + + +E F+K RK+EGR++SD+DLKL + LRYYM +
Sbjct: 254 HTAACLHSLALEEPTVIKKYLL-KVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEA 312
Query: 365 XXXXXXXXXXXXXXYEAANRNLEKARAKNKDV 460
YE +N+ L+KAR K+KDV
Sbjct: 313 AKDLLYRRTKALIDYENSNKALDKARLKSKDV 344
>AL121585-3|CAI14858.1| 269|Homo sapiens sorting nexin 5 protein.
Length = 269
Score = 73.7 bits (173), Expect = 4e-13
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 148 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 206
Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
+I ++C+ LA E ++++L +
Sbjct: 207 YIHTAACLHSLALEEPTVIKKYLLK 231
Score = 50.0 bits (114), Expect = 5e-06
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +2
Query: 185 HQAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADTLRYYM 349
H A LH+ A ++ + + +E F+K RK+EGR++SD+DLKL + LRYYM
Sbjct: 209 HTAACLHSLALEEPTVIKKYLL-KVAELFEKLRKVEGRVSSDEDLKLTELLRYYM 262
>AL121585-2|CAC00471.1| 404|Homo sapiens sorting nexin 5 protein.
Length = 404
Score = 73.7 bits (173), Expect = 4e-13
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 185 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 243
Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
+I ++C+ LA E ++++L +
Sbjct: 244 YIHTAACLHSLALEEPTVIKKYLLK 268
Score = 65.7 bits (153), Expect = 1e-10
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +2
Query: 185 HQAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXX 364
H A LH+ A ++ + + +E F+K RK+EGR++SD+DLKL + LRYYM +
Sbjct: 246 HTAACLHSLALEEPTVIKKYLL-KVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEA 304
Query: 365 XXXXXXXXXXXXXXYEAANRNLEKARAKNKDV 460
YE +N+ L+KAR K+KDV
Sbjct: 305 AKDLLYRRTKALIDYENSNKALDKARLKSKDV 336
>AK223308-1|BAD97028.1| 404|Homo sapiens sorting nexin 5 variant
protein.
Length = 404
Score = 73.7 bits (173), Expect = 4e-13
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 185 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 243
Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
+I ++C+ LA E ++++L +
Sbjct: 244 YIHTAACLHSLALEEPTVIKKYLLK 268
Score = 65.7 bits (153), Expect = 1e-10
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +2
Query: 185 HQAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXX 364
H A LH+ A ++ + + +E F+K RK+EGR++SD+DLKL + LRYYM +
Sbjct: 246 HTAACLHSLALEEPTVIKKYLL-KVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEA 304
Query: 365 XXXXXXXXXXXXXXYEAANRNLEKARAKNKDV 460
YE +N+ L+KAR K+KDV
Sbjct: 305 AKDLLYRRTKALIDYENSNKALDKARLKSKDV 336
>AK001793-1|BAA91914.1| 404|Homo sapiens protein ( Homo sapiens
cDNA FLJ10931 fis, clone OVARC1000564. ).
Length = 404
Score = 73.7 bits (173), Expect = 4e-13
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 185 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 243
Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
+I ++C+ LA E ++++L +
Sbjct: 244 YIHTAACLHSLALEEPTVIKKYLLK 268
Score = 65.7 bits (153), Expect = 1e-10
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +2
Query: 185 HQAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXX 364
H A LH+ A ++ + + +E F+K RK+EGR++SD+DLKL + LRYYM +
Sbjct: 246 HTAACLHSLALEEPTVIKKYLL-KVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEA 304
Query: 365 XXXXXXXXXXXXXXYEAANRNLEKARAKNKDV 460
YE +N+ L+KAR K+KDV
Sbjct: 305 AKDLLYRRTKALIDYENSNKALDKARLKSKDV 336
>AF121855-1|AAD27828.1| 404|Homo sapiens sorting nexin 5 protein.
Length = 404
Score = 73.7 bits (173), Expect = 4e-13
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 185 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 243
Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
+I ++C+ LA E ++++L +
Sbjct: 244 YIHTAACLHSLALEEPTVIKKYLLK 268
Score = 65.7 bits (153), Expect = 1e-10
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +2
Query: 185 HQAVVLHNSARDQRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXX 364
H A LH+ A ++ + + +E F+K RK+EGR++SD+DLKL + LRYYM +
Sbjct: 246 HTAACLHSLALEEPTVIKKYLL-KVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEA 304
Query: 365 XXXXXXXXXXXXXXYEAANRNLEKARAKNKDV 460
YE +N+ L+KAR K+KDV
Sbjct: 305 AKDLLYRRTKALIDYENSNKALDKARLKSKDV 336
>U83194-1|AAD24202.1| 410|Homo sapiens TRAF4-associated factor 2
protein.
Length = 410
Score = 71.3 bits (167), Expect = 2e-12
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +2
Query: 254 EASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXXXXXXXXXXXXXXXXYEAANRNLE 433
+ SE FDK RKIE R+++D+DLKL+D L+YY+R+ YE AN+ L+
Sbjct: 273 KVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALD 332
Query: 434 KARAKNKDV 460
KARAKNKDV
Sbjct: 333 KARAKNKDV 341
Score = 64.9 bits (151), Expect = 2e-10
Identities = 30/82 (36%), Positives = 51/82 (62%)
Frame = +3
Query: 12 RSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIK 191
++M + D + + V+DV+DFFE E +FL EY++ +K+A AK DRMT HK AD + +
Sbjct: 193 KNMVKSADGVIVSG-VKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNR 251
Query: 192 LSSCITQLATREQPPMERFLTR 257
+ S + L T++ + +F +
Sbjct: 252 IGSSLYALGTQDSTDICKFFLK 273
>BC001798-1|AAH01798.1| 290|Homo sapiens SNX6 protein protein.
Length = 290
Score = 71.3 bits (167), Expect = 2e-12
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +2
Query: 254 EASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXXXXXXXXXXXXXXXXYEAANRNLE 433
+ SE FDK RKIE R+++D+DLKL+D L+YY+R+ YE AN+ L+
Sbjct: 153 KVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALD 212
Query: 434 KARAKNKDV 460
KARAKNKDV
Sbjct: 213 KARAKNKDV 221
Score = 64.9 bits (151), Expect = 2e-10
Identities = 30/82 (36%), Positives = 51/82 (62%)
Frame = +3
Query: 12 RSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIK 191
++M + D + + V+DV+DFFE E +FL EY++ +K+A AK DRMT HK AD + +
Sbjct: 73 KNMVKSADGVIVSG-VKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNR 131
Query: 192 LSSCITQLATREQPPMERFLTR 257
+ S + L T++ + +F +
Sbjct: 132 IGSSLYALGTQDSTDICKFFLK 153
>AF121856-1|AAD27829.1| 406|Homo sapiens sorting nexin 6 protein.
Length = 406
Score = 71.3 bits (167), Expect = 2e-12
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +2
Query: 254 EASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXXXXXXXXXXXXXXXXYEAANRNLE 433
+ SE FDK RKIE R+++D+DLKL+D L+YY+R+ YE AN+ L+
Sbjct: 269 KVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALD 328
Query: 434 KARAKNKDV 460
KARAKNKDV
Sbjct: 329 KARAKNKDV 337
Score = 64.9 bits (151), Expect = 2e-10
Identities = 30/82 (36%), Positives = 51/82 (62%)
Frame = +3
Query: 12 RSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIK 191
++M + D + + V+DV+DFFE E +FL EY++ +K+A AK DRMT HK AD + +
Sbjct: 189 KNMVKSADGVIVSG-VKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNR 247
Query: 192 LSSCITQLATREQPPMERFLTR 257
+ S + L T++ + +F +
Sbjct: 248 IGSSLYALGTQDSTDICKFFLK 269
>AF109364-1|AAQ13512.1| 216|Homo sapiens MSTP010 protein.
Length = 216
Score = 71.3 bits (167), Expect = 2e-12
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +2
Query: 254 EASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXXXXXXXXXXXXXXXXYEAANRNLE 433
+ SE FDK RKIE R+++D+DLKL+D L+YY+R+ YE AN+ L+
Sbjct: 79 KVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALD 138
Query: 434 KARAKNKDV 460
KARAKNKDV
Sbjct: 139 KARAKNKDV 147
Score = 63.7 bits (148), Expect = 4e-10
Identities = 30/80 (37%), Positives = 49/80 (61%)
Frame = +3
Query: 18 MTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLS 197
M + D + + V+DV+DFFE E +FL EY++ +K+A AK DRMT HK AD + ++
Sbjct: 1 MVKSADGVIVSG-VKDVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIG 59
Query: 198 SCITQLATREQPPMERFLTR 257
S + L T++ + +F +
Sbjct: 60 SSLYALGTQDSTDICKFFLK 79
>AL121585-4|CAI14859.1| 228|Homo sapiens sorting nexin 5 protein.
Length = 228
Score = 70.5 bits (165), Expect = 3e-12
Identities = 32/75 (42%), Positives = 49/75 (65%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
G +S+ + DE+ L V++V+DFFEQE +FL YY+ +K++ K D+MT HK VAD
Sbjct: 150 GFFKSVVKSADEV-LFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADD 208
Query: 183 HIKLSSCITQLATRE 227
+I ++C+ LA E
Sbjct: 209 YIHTAACLHSLALEE 223
>BC045563-1|AAH45563.1| 403|Homo sapiens hypothetical protein
FLJ30934 protein.
Length = 403
Score = 69.3 bits (162), Expect = 8e-12
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = +2
Query: 260 SETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXXXXXXXXXXXXXXXXYEAANRNLEKA 439
+E F++ RK+EGR+ASD+DLKL+D LRYYMRD YE AN+ L+KA
Sbjct: 268 AELFERLRKLEGRVASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKA 327
Query: 440 RAKNKDV 460
R +N++V
Sbjct: 328 RTRNREV 334
Score = 59.3 bits (137), Expect = 8e-09
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGAT--VRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVA 176
G +R++ + DE + +++V+DFFE E +FL EY++ +++A + DR+ HK +A
Sbjct: 180 GFLRNIVKSADEALITGMSGLKEVDDFFEHERTFLLEYHTRIRDACLRADRVMRAHKCLA 239
Query: 177 DAHIKLSSCITQLATRE 227
D +I +S+ ++ L T+E
Sbjct: 240 DDYIPISAALSSLGTQE 256
>BC040981-1|AAH40981.1| 403|Homo sapiens hypothetical protein
FLJ30934 protein.
Length = 403
Score = 67.7 bits (158), Expect = 2e-11
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = +2
Query: 260 SETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXXXXXXXXXXXXXXXXYEAANRNLEKA 439
+E F++ RK+EGR+ SD+DLKL+D LRYYMRD YE AN+ L+KA
Sbjct: 268 AELFERLRKLEGRVVSDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKA 327
Query: 440 RAKNKDV 460
R +N++V
Sbjct: 328 RTRNREV 334
Score = 59.3 bits (137), Expect = 8e-09
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGAT--VRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVA 176
G +R++ + DE + +++V+DFFE E +FL EY++ +++A + DR+ HK +A
Sbjct: 180 GFLRNIVKSADEALITGMSGLKEVDDFFEHERTFLLEYHTRIRDACLRADRVMRAHKCLA 239
Query: 177 DAHIKLSSCITQLATRE 227
D +I +S+ ++ L T+E
Sbjct: 240 DDYIPISAALSSLGTQE 256
>AK055496-1|BAB70935.1| 277|Homo sapiens protein ( Homo sapiens
cDNA FLJ30934 fis, clone FEBRA2007017, moderately
similar to Homo sapiens TRAF4-associated factor 2 mRNA.
).
Length = 277
Score = 45.2 bits (102), Expect = 1e-04
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +3
Query: 3 GLVRSMTTTTDEIYLGAT--VRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHK 167
G +R++ + DE + +++V+DFFE E +FL EY++ +++A + DR+ HK
Sbjct: 180 GFLRNIVKSADEALITGMSGLKEVDDFFEHERTFLLEYHTRIRDACLRADRVMRAHK 236
>Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain
protein.
Length = 1798
Score = 35.1 bits (77), Expect = 0.16
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 371 LSLRERLSCSTGECPP-ASGPGRTPCDPRFSGTCQMSR 261
LS+ +RL C +C + PG TPCDP SG+C R
Sbjct: 459 LSISDRLGCRRCQCNARGTVPGSTPCDPN-SGSCYCKR 495
>S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain
protein.
Length = 1798
Score = 35.1 bits (77), Expect = 0.16
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 371 LSLRERLSCSTGECPP-ASGPGRTPCDPRFSGTCQMSR 261
LS+ +RL C +C + PG TPCDP SG+C R
Sbjct: 459 LSISDRLGCRRCQCNARGTVPGSTPCDPN-SGSCYCKR 495
>AF521017-1|AAM74201.1| 472|Homo sapiens SOCIUS protein isoform 1
protein.
Length = 472
Score = 32.7 bits (71), Expect = 0.84
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 380 RAALSLRERLSCSTGECPPASGPGRTPC 297
RA + + L S G CPP GPG +PC
Sbjct: 437 RARRAPKSSLKFSPGPCPPGPGPGPSPC 464
>AF520989-1|AAM76060.1| 472|Homo sapiens unknown protein.
Length = 472
Score = 32.7 bits (71), Expect = 0.84
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 380 RAALSLRERLSCSTGECPPASGPGRTPC 297
RA + + L S G CPP GPG +PC
Sbjct: 437 RARRAPKSSLKFSPGPCPPGPGPGPSPC 464
>BC115378-1|AAI15379.1| 875|Homo sapiens coiled-coil domain
containing 141 protein.
Length = 875
Score = 30.7 bits (66), Expect = 3.4
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +3
Query: 42 YLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQL 215
++ +V + ++ T Q Y L+E ++++ +KHKEV ++ +L +T+L
Sbjct: 483 FIAPSVPQQEERIQEATDLAQHLYG-LEEGQKYIEKIVTKHKEVLESVTELCESLTEL 539
>AK129847-1|BAC85242.1| 875|Homo sapiens protein ( Homo sapiens
cDNA FLJ26337 fis, clone HRT02844. ).
Length = 875
Score = 30.7 bits (66), Expect = 3.4
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +3
Query: 42 YLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQL 215
++ +V + ++ T Q Y L+E ++++ +KHKEV ++ +L +T+L
Sbjct: 483 FIAPSVPQQEERIQEATDLAQHLYG-LEEGQKYIEKIVTKHKEVLESVTELCESLTEL 539
>L76191-1|AAC41949.1| 712|Homo sapiens interleukin-1
receptor-associated kinase protein.
Length = 712
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 368 SLRERLSCSTGECPPASGPGRTPCDPRFSGTCQMSRRPREEPLHGRLLSGREL 210
SL +RL C T CPP S P R + Q + +HG + S L
Sbjct: 295 SLEDRLHCQTQACPPLSWPQRLDILLGTARAIQFLHQDSPSLIHGDIKSSNVL 347
>DQ054788-1|AAY88246.1| 633|Homo sapiens interleukin-1 receptor
associated-kinase 1 splice variant c protein.
Length = 633
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 368 SLRERLSCSTGECPPASGPGRTPCDPRFSGTCQMSRRPREEPLHGRLLSGREL 210
SL +RL C T CPP S P R + Q + +HG + S L
Sbjct: 295 SLEDRLHCQTQACPPLSWPQRLDILLGTARAIQFLHQDSPSLIHGDIKSSNVL 347
>BC054000-1|AAH54000.1| 693|Homo sapiens IRAK1 protein protein.
Length = 693
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 368 SLRERLSCSTGECPPASGPGRTPCDPRFSGTCQMSRRPREEPLHGRLLSGREL 210
SL +RL C T CPP S P R + Q + +HG + S L
Sbjct: 321 SLEDRLHCQTQACPPLSWPQRLDILLGTARAIQFLHQDSPSLIHGDIKSSNVL 373
>BC014963-1|AAH14963.1| 633|Homo sapiens interleukin-1
receptor-associated kinase 1 protein.
Length = 633
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 368 SLRERLSCSTGECPPASGPGRTPCDPRFSGTCQMSRRPREEPLHGRLLSGREL 210
SL +RL C T CPP S P R + Q + +HG + S L
Sbjct: 295 SLEDRLHCQTQACPPLSWPQRLDILLGTARAIQFLHQDSPSLIHGDIKSSNVL 347
>AF346607-1|AAK62888.1| 682|Homo sapiens interleukin-1 receptor
associated kinase 1b protein.
Length = 682
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 368 SLRERLSCSTGECPPASGPGRTPCDPRFSGTCQMSRRPREEPLHGRLLSGREL 210
SL +RL C T CPP S P R + Q + +HG + S L
Sbjct: 295 SLEDRLHCQTQACPPLSWPQRLDILLGTARAIQFLHQDSPSLIHGDIKSSNVL 347
>AF030876-1|AAC08756.1| 712|Homo sapiens Interleukin 1
receptor-associated kinase 1 protein.
Length = 712
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 368 SLRERLSCSTGECPPASGPGRTPCDPRFSGTCQMSRRPREEPLHGRLLSGREL 210
SL +RL C T CPP S P R + Q + +HG + S L
Sbjct: 295 SLEDRLHCQTQACPPLSWPQRLDILLGTARAIQFLHQDSPSLIHGDIKSSNVL 347
>X79683-1|CAA56130.1| 1798|Homo sapiens beta2/S laminin chain
protein.
Length = 1798
Score = 29.9 bits (64), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 371 LSLRERLSCSTGECPP-ASGPGRTPCDPRFSGTCQMSR 261
LS+ + C +C + PG TPCDP SG+C R
Sbjct: 459 LSISDPSGCRRCQCNARGTVPGSTPCDPN-SGSCYCKR 495
>U93567-1|AAC51266.1| 338|Homo sapiens p40 protein.
Length = 338
Score = 29.9 bits (64), Expect = 5.9
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 69 NDFFE-QETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLATREQ 230
NDF E +E F + YS L+E + +K KEV + L CIT+++ E+
Sbjct: 37 NDFDELREEGFRRSNYSELREDIQ------TKGKEVENVEKNLEECITRISNTEK 85
>U93571-1|AAC51274.1| 337|Homo sapiens p40 protein.
Length = 337
Score = 29.5 bits (63), Expect = 7.8
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 69 NDFFE-QETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLATREQ 230
NDF E +E F + YS L+E + +K KEV + L CIT++++ E+
Sbjct: 37 NDFDELREEGFRRSNYSELREDIQ------TKGKEVENFEKNLEECITRISSTEK 85
>U30872-1|AAA82935.1| 3113|Homo sapiens mitosin protein.
Length = 3113
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 63 DVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLAT 221
D ++ +E T +E H E K + S+HK + D H ++SS +++L T
Sbjct: 1384 DESNSYEHLTLSDKEVQMHFAELQEKFLSLQSEHKILHDQHCQMSSKMSELQT 1436
>U19769-1|AAA82889.1| 3210|Homo sapiens CENP-F kinetochore protein
protein.
Length = 3210
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 63 DVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLAT 221
D ++ +E T +E H E K + S+HK + D H ++SS +++L T
Sbjct: 1385 DESNSYEHLTLSDKEVQMHFAELQEKFLSLQSEHKILHDQHCQMSSKMSELQT 1437
>D38024-1|BAA07227.1| 853|Homo sapiens facioscapulohumeral muscular
dystrophy protein.
Length = 853
Score = 29.5 bits (63), Expect = 7.8
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 326 PASGPGRTPCDPRFSGTCQMSRRP 255
PA PG TP PR G C+ SRRP
Sbjct: 796 PARAPG-TPPPPRGRGRCKASRRP 818
>AY834276-1|AAV97884.1| 1042|Homo sapiens mitogen-activated protein
kinase kinase kinase kinase 4 isoform protein.
Length = 1042
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 218 RELSYARRQLDVSVRHFFVLRRHTVDFSDCLLEVRVVFLQKRR 90
RE Y RRQL+ RH VL++ + LLE R +++ R
Sbjct: 316 REQEYIRRQLEEEQRHLEVLQQQLLQEQAMLLECRWREMEEHR 358
>AY212247-1|AAO32626.1| 1239|Homo sapiens Ste20 group protein kinase
HGK protein.
Length = 1239
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 218 RELSYARRQLDVSVRHFFVLRRHTVDFSDCLLEVRVVFLQKRR 90
RE Y RRQL+ RH VL++ + LLE R +++ R
Sbjct: 463 REQEYIRRQLEEEQRHLEVLQQQLLQEQAMLLECRWREMEEHR 505
>AL445666-1|CAH71810.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 63 DVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLAT 221
D ++ +E T +E H E K + S+HK + D H ++SS +++L T
Sbjct: 1385 DESNSYEHLTLSDKEVQMHFAELQEKFLSLQSEHKILHDQHCQMSSKMSELQT 1437
>AL445305-6|CAH73032.1| 3114|Homo sapiens centromere protein F,
350/400ka (mitosin) protein.
Length = 3114
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 63 DVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLAT 221
D ++ +E T +E H E K + S+HK + D H ++SS +++L T
Sbjct: 1385 DESNSYEHLTLSDKEVQMHFAELQEKFLSLQSEHKILHDQHCQMSSKMSELQT 1437
>AC005035-1|AAY14969.1| 1260|Homo sapiens unknown protein.
Length = 1260
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 218 RELSYARRQLDVSVRHFFVLRRHTVDFSDCLLEVRVVFLQKRR 90
RE Y RRQL+ RH VL++ + LLE R +++ R
Sbjct: 403 REQEYIRRQLEEEQRHLEVLQQQLLQEQAMLLECRWREMEEHR 445
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,797,216
Number of Sequences: 237096
Number of extensions: 1337602
Number of successful extensions: 5062
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 4639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5049
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -