Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1780X
         (535 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069492-1|AAL39637.1|  449|Drosophila melanogaster LD22082p pro...   103   2e-22
AE014134-1435|AAF52625.2|  449|Drosophila melanogaster CG8282-PA...   103   2e-22
AY052108-1|AAK93532.1|  395|Drosophila melanogaster SD05495p pro...    33   0.32 
AE014134-1238|AAF52482.2|  395|Drosophila melanogaster CG8902-PA...    33   0.32 
AY129453-1|AAM76195.1|  904|Drosophila melanogaster RE25591p pro...    31   1.3  
AE014296-1688|AAF50244.3|  904|Drosophila melanogaster CG32048-P...    31   1.3  
BT001471-1|AAN71226.1| 1048|Drosophila melanogaster LD03769p pro...    29   4.0  
AF247500-1|AAF63388.1| 1048|Drosophila melanogaster kinesin-like...    29   4.0  
AE014134-1877|AAF52943.2| 1048|Drosophila melanogaster CG5300-PA...    29   4.0  
AY071214-1|AAL48836.1|  413|Drosophila melanogaster RE25913p pro...    29   5.3  
AE013599-2597|AAN16135.1|  623|Drosophila melanogaster CG10910-P...    29   5.3  
AY052011-1|AAK93435.1|  362|Drosophila melanogaster LD47277p pro...    28   9.2  
AE014297-249|AAF52029.3|  306|Drosophila melanogaster CG14669-PA...    28   9.2  
AE014296-3709|AAF51854.3|  362|Drosophila melanogaster CG11367-P...    28   9.2  

>AY069492-1|AAL39637.1|  449|Drosophila melanogaster LD22082p
           protein.
          Length = 449

 Score =  103 bits (247), Expect = 2e-22
 Identities = 45/85 (52%), Positives = 63/85 (74%)
 Frame = +3

Query: 3   GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
           G V+S+  TTDEI L ATVRDVNDFFE E  FL EY+ HL+EA  + ++MT +HK+V D+
Sbjct: 228 GFVKSLGKTTDEILLSATVRDVNDFFENELQFLTEYHGHLREAALRTEKMTQRHKDVGDS 287

Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
           H K+S+ +TQL+T E+  +E F+ +
Sbjct: 288 HQKISNALTQLSTTEKGNVETFVAK 312



 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 46/100 (46%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
 Frame = +2

Query: 176 GRSHQAVVLHNSARDQRAASHGEVPH---EASETFDKCRKIEGRMASDQDLKLADTLRYY 346
           G SHQ +   N+         G V     + +E F++ + +E R+ASDQDLKL DTLRYY
Sbjct: 285 GDSHQKI--SNALTQLSTTEKGNVETFVAKTAEIFERIKNLETRVASDQDLKLGDTLRYY 342

Query: 347 MRDXXXXXXXXXXXXXXXXXYEAANRNLEKARAKNKDVHA 466
            RD                 YEAANRNLEKAR+KNKDVHA
Sbjct: 343 QRDSDAAKALLIRRLRCLAAYEAANRNLEKARSKNKDVHA 382


>AE014134-1435|AAF52625.2|  449|Drosophila melanogaster CG8282-PA
           protein.
          Length = 449

 Score =  103 bits (247), Expect = 2e-22
 Identities = 45/85 (52%), Positives = 63/85 (74%)
 Frame = +3

Query: 3   GLVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADA 182
           G V+S+  TTDEI L ATVRDVNDFFE E  FL EY+ HL+EA  + ++MT +HK+V D+
Sbjct: 228 GFVKSLGKTTDEILLSATVRDVNDFFENELQFLTEYHGHLREAALRTEKMTQRHKDVGDS 287

Query: 183 HIKLSSCITQLATREQPPMERFLTR 257
           H K+S+ +TQL+T E+  +E F+ +
Sbjct: 288 HQKISNALTQLSTTEKGNVETFVAK 312



 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 46/100 (46%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
 Frame = +2

Query: 176 GRSHQAVVLHNSARDQRAASHGEVPH---EASETFDKCRKIEGRMASDQDLKLADTLRYY 346
           G SHQ +   N+         G V     + +E F++ + +E R+ASDQDLKL DTLRYY
Sbjct: 285 GDSHQKI--SNALTQLSTTEKGNVETFVAKTAEIFERIKNLETRVASDQDLKLGDTLRYY 342

Query: 347 MRDXXXXXXXXXXXXXXXXXYEAANRNLEKARAKNKDVHA 466
            RD                 YEAANRNLEKAR+KNKDVHA
Sbjct: 343 QRDSDAAKALLIRRLRCLAAYEAANRNLEKARSKNKDVHA 382


>AY052108-1|AAK93532.1|  395|Drosophila melanogaster SD05495p
           protein.
          Length = 395

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 72  DFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLATREQPPME-RF 248
           +  EQ+   L +   H ++ V +  ++T   +++  A   + SC T+LA+++Q   E R 
Sbjct: 194 ELIEQQQGELDKRIGHWEQLVVEDSQVTELREKIKSASSHVESCKTELASKKQVTNEHRR 253

Query: 249 LTRPPRHLTSA 281
           +    +H+ +A
Sbjct: 254 MIENSQHIATA 264


>AE014134-1238|AAF52482.2|  395|Drosophila melanogaster CG8902-PA
           protein.
          Length = 395

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 72  DFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLATREQPPME-RF 248
           +  EQ+   L +   H ++ V +  ++T   +++  A   + SC T+LA+++Q   E R 
Sbjct: 194 ELIEQQQGELDKRIGHWEQLVVEDSQVTELREKIKSASSHVESCKTELASKKQVTNEHRR 253

Query: 249 LTRPPRHLTSA 281
           +    +H+ +A
Sbjct: 254 MIENSQHIATA 264


>AY129453-1|AAM76195.1|  904|Drosophila melanogaster RE25591p
           protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 389 VSSRAALSLRERLSCSTGECPPASGPGRTPCDPRFSGTCQMSRRPR 252
           +S   +L +RE + C   E  PA+G G     PRF     +  +P+
Sbjct: 119 LSRNKSLDIRELIGCVEREMAPATGGGPVSQPPRFIDDTYIDHKPK 164


>AE014296-1688|AAF50244.3|  904|Drosophila melanogaster CG32048-PB,
           isoform B protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 389 VSSRAALSLRERLSCSTGECPPASGPGRTPCDPRFSGTCQMSRRPR 252
           +S   +L +RE + C   E  PA+G G     PRF     +  +P+
Sbjct: 119 LSRNKSLDIRELIGCVEREMAPATGGGPVSQPPRFIDDTYIDHKPK 164


>BT001471-1|AAN71226.1| 1048|Drosophila melanogaster LD03769p protein.
          Length = 1048

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 221  QRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADT 334
            +R  S    P   S+ FDK  K+  R A  QDL   DT
Sbjct: 1000 RRTTSRSPSPLGNSDPFDKSPKVRRRTAKRQDLLFGDT 1037


>AF247500-1|AAF63388.1| 1048|Drosophila melanogaster kinesin-like
            protein protein.
          Length = 1048

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 221  QRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADT 334
            +R  S    P   S+ FDK  K+  R A  QDL   DT
Sbjct: 1000 RRTTSRSPSPLGNSDPFDKSPKVRRRTAKRQDLLFGDT 1037


>AE014134-1877|AAF52943.2| 1048|Drosophila melanogaster CG5300-PA
            protein.
          Length = 1048

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 221  QRAASHGEVPHEASETFDKCRKIEGRMASDQDLKLADT 334
            +R  S    P   S+ FDK  K+  R A  QDL   DT
Sbjct: 1000 RRTTSRSPSPLGNSDPFDKSPKVRRRTAKRQDLLFGDT 1037


>AY071214-1|AAL48836.1|  413|Drosophila melanogaster RE25913p
           protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 180 AHIKLSSCITQLATREQPPMERFLTRPPRHLTSAG 284
           A I L++CI Q   +  PP    L  PP++ T+ G
Sbjct: 166 ASIALANCIAQSQPQPLPPQNSTLPPPPQNSTTEG 200


>AE013599-2597|AAN16135.1|  623|Drosophila melanogaster CG10910-PB
           protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 180 AHIKLSSCITQLATREQPPMERFLTRPPRHLTSAG 284
           A I L++CI Q   +  PP    L  PP++ T+ G
Sbjct: 166 ASIALANCIAQSQPQPLPPQNSTLPPPPQNSTTEG 200


>AY052011-1|AAK93435.1|  362|Drosophila melanogaster LD47277p
           protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 6   LVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRM 152
           L+  +   T  +YLG+T+R +++      + L  Y S L E +  V  M
Sbjct: 283 LIGLLPAQTINVYLGSTLRSMHEVLSDNDTKLTGYISFLFEVICGVALM 331


>AE014297-249|AAF52029.3|  306|Drosophila melanogaster CG14669-PA
           protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 87  ETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCITQLATREQPPMERF 248
           +TS LQ+++ H           T+ H+++    +   +CI +L   + PP +RF
Sbjct: 107 KTSILQQFFYHDFPRT----HQTTTHRKIYKNCLVCDTCIRELMVLDVPPQKRF 156


>AE014296-3709|AAF51854.3|  362|Drosophila melanogaster CG11367-PA
           protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 6   LVRSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRM 152
           L+  +   T  +YLG+T+R +++      + L  Y S L E +  V  M
Sbjct: 283 LIGLLPAQTINVYLGSTLRSMHEVLSDNDTKLTGYISFLFEVICGVALM 331


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,902,447
Number of Sequences: 53049
Number of extensions: 425758
Number of successful extensions: 1886
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1878
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)