Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1780X
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-11|CAB60945.4|  552|Caenorhabditis elegans Hypothetical...    62   2e-10
AF326939-1|AAG49389.1|  109|Caenorhabditis elegans mitochondrial...    29   2.8  
AF038604-5|AAB92010.1|  109|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic letha...    28   4.8  
AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.     28   4.8  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    28   4.8  
AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three par...    28   4.8  
AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical...    27   8.5  

>AL132898-11|CAB60945.4|  552|Caenorhabditis elegans Hypothetical
           protein Y59A8B.22 protein.
          Length = 552

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = +2

Query: 254 EASETFDKCRKIEGRMASDQDLKLADTLRYYMRDXXXXXXXXXXXXXXXXXYEAANRNLE 433
           + ++   K +K+E R ++D++LKL DTL Y+ RD                 YEAAN+NLE
Sbjct: 415 QGADAMFKLKKVESRSSNDEELKLGDTLHYFARDTQAAKDLLYRRMRCLANYEAANKNLE 474

Query: 434 KARAKNKDV 460
           +ARAKN+++
Sbjct: 475 RARAKNREI 483



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 19/52 (36%), Positives = 34/52 (65%)
 Frame = +3

Query: 12  RSMTTTTDEIYLGATVRDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHK 167
           +  T + DE+ L    +DV++FFE+E +++ EY  H+KEA AK +++ +  K
Sbjct: 260 KRFTQSADEVLLSGQ-KDVDEFFEKEKNYMVEYNIHIKEAAAKSEKLIAARK 310


>AF326939-1|AAG49389.1|  109|Caenorhabditis elegans mitochondrial
           ATPase inhibitor protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 60  RDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAH 185
           R+   F++++ + LQE   H++E V   +     HK+V + H
Sbjct: 51  REDEYFYKKQKAQLQELREHIQEEVKHHEGQLENHKKVLERH 92


>AF038604-5|AAB92010.1|  109|Caenorhabditis elegans Hypothetical
           protein B0546.1 protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 60  RDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAH 185
           R+   F++++ + LQE   H++E V   +     HK+V + H
Sbjct: 51  REDEYFYKKQKAQLQELREHIQEEVKHHEGQLENHKKVLERH 92


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 105  EYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCIT--QLATREQPPMERFLTRPPRHLTS 278
            E Y HLKE  +K D    K K  ++   + +SC T      R  PP  R + +    L +
Sbjct: 1802 EDYEHLKELQSKFDEFKQKVKNGSE---RFTSCETAANAILRRNPPFARDVVKKQEALRT 1858

Query: 279  A 281
            A
Sbjct: 1859 A 1859


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 105  EYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCIT--QLATREQPPMERFLTRPPRHLTS 278
            E Y HLKE  +K D    K K  ++   + +SC T      R  PP  R + +    L +
Sbjct: 1802 EDYEHLKELQSKFDEFKQKVKNGSE---RFTSCETAANAILRRNPPFARDVVKKQEALRT 1858

Query: 279  A 281
            A
Sbjct: 1859 A 1859


>U58728-3|AAX55695.1|  305|Caenorhabditis elegans Synthetic lethal
           with mec protein3, isoform a protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 153 TSKHKEVADAHIKLSSCITQLATREQPPMERFLTRPPRHLT 275
           TS H ++++  +  SS     +  ++P +ER +  PP+H T
Sbjct: 185 TSSHPKLSNVDVLESSSAASNSQVDEPVVERRVIHPPQHPT 225


>AY221634-1|AAO66457.1|  305|Caenorhabditis elegans SYM-3A protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 153 TSKHKEVADAHIKLSSCITQLATREQPPMERFLTRPPRHLT 275
           TS H ++++  +  SS     +  ++P +ER +  PP+H T
Sbjct: 185 TSSHPKLSNVDVLESSSAASNSQVDEPVVERRVIHPPQHPT 225


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
            spectrin homolog Sma1 protein.
          Length = 4063

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 105  EYYSHLKEAVAKVDRMTSKHKEVADAHIKLSSCIT--QLATREQPPMERFLTRPPRHLTS 278
            E Y HLKE  +K D    K K  ++   + +SC T      R  PP  R + +    L +
Sbjct: 1802 EDYEHLKELQSKFDEFKQKVKNGSE---RFTSCETAANAILRRNPPFARDVVKKQEALRT 1858

Query: 279  A 281
            A
Sbjct: 1859 A 1859


>AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three
           paralog protein 3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 339 RRVSASFRSWSDAMRPSIFRHLSNVSEAS*GTSPWEAALWS 217
           R VS+   +  DA+R  + + L+ V E S  T+P E  +W+
Sbjct: 86  RSVSSKLLASHDAIRQKLLQKLAIVVEESLNTNPVETFVWT 126


>AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical
           protein Y18H1A.15 protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 227 LSGRELSYARRQLDVSVRHFFVLRRHTVDFSDCLLEVRVVFLQKRRLLLEEVVHV 63
           L+GR   Y+   L +  RH   +R+  +    CL+   ++FL   +LLL EV+ V
Sbjct: 77  LNGRSSGYSD-VLAIVFRHLPTIRQIIISVL-CLITALLIFLVVWKLLLFEVIEV 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,284,936
Number of Sequences: 27780
Number of extensions: 198559
Number of successful extensions: 664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)