Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1780X
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 122 QGGSR*SRPYDVEAQRSGGRSHQAVVLHNSARDQRAASHG 241
           Q  S+ S+P     Q+   + HQ VV    ++ Q+AA  G
Sbjct: 211 QAASQQSQPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQG 250


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 439 RLLQVPVGCFVGS*TPESPHEQRFRCVSVSHV 344
           R   +PVG      T E+P + R+ C   S V
Sbjct: 261 RFFGLPVGVTAAIPTSENPADYRYFCPDGSKV 292


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 439 RLLQVPVGCFVGS*TPESPHEQRFRCVSVSHV 344
           R   +PVG      T E+P + R+ C   S V
Sbjct: 261 RFFGLPVGVTAAIPTSENPADYRYFCPDGSKV 292


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 439 RLLQVPVGCFVGS*TPESPHEQRFRCVSVSHV 344
           R   +PVG      T E+P + R+ C   S V
Sbjct: 261 RFFGLPVGVTAAIPTSENPADYRYFCPDGSKV 292


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 394 PESPHEQRFRCVSVSHVVPESVRQLQVLVGRHATLDFPALVKCL 263
           P++P E+  R +S      E   Q   L   +   D P  V CL
Sbjct: 272 PDTPEEKYIRTLSKGDFFGEKALQGDDLRTANIIADDPEGVSCL 315


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 111 YSHLKEAVAKVDRMTSKHKEVADAHIKLSSC 203
           YS+L E + + D    K++ ++    + SSC
Sbjct: 296 YSYLDEKLERNDLDLEKYEGISSTPSQASSC 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,395
Number of Sequences: 438
Number of extensions: 2504
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)