Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1779X
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 28 0.53
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 26 2.1
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 25 2.8
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 2.8
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 3.7
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 25 3.7
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 4.9
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.9
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual 24 6.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 24 6.5
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 24 8.6
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 27.9 bits (59), Expect = 0.53
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -2
Query: 251 LGLHGLCVSLSKRLGIVLMDL 189
+G HGLC + +++G+ ++DL
Sbjct: 887 IGKHGLCYATGRKIGVKMLDL 907
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 211 NLFERLTHKPCRPRKGAKKKKEIKYRS 291
N+ + +T +PCRPR K+ + IK S
Sbjct: 50 NVGDAVTIQPCRPRSATKRFEIIKILS 76
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 209 GIVLMDLFFGFEDWNGIWKKDQVY 138
G+V +D + GF W+G+ K D Y
Sbjct: 75 GVVRLD-YLGFGGWSGVQKNDGKY 97
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 74 ASFIFHNNIKL*PFMYLVYIIYIPDPFSKFRSNLQIQKI 190
A+ IF++++ L P Y + ++ DPF +S +Q+I
Sbjct: 337 AAGIFYHDLALRPHAYQHFNTWMGDPFRAVQSRYILQEI 375
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/51 (19%), Positives = 23/51 (45%)
Frame = -2
Query: 245 LHGLCVSLSKRLGIVLMDLFFGFEDWNGIWKKDQVYILYKLST*MVTILYY 93
+ G+ + L +++ +FFGF G W V++ ++ + Y+
Sbjct: 404 IDGIYIIYFDMLALIIPTIFFGFFGSQGHWFTSSVFLFTASLVSIIPLAYF 454
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 284 YLISFFFFAP--FLGLHGLCVSLSKRLGIVLMDLFFG 180
Y+ S F+ +P LGLH C LG +L +LF G
Sbjct: 291 YIQSRFYRSPEVILGLHYNCGIDMWSLGCILAELFLG 327
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 4.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 282 VSFCGFDYYYPIMS 323
V CGF+ Y+P+MS
Sbjct: 552 VCVCGFNIYFPLMS 565
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 278 ISFFFFAPFLGLHGLCVSLSKRLG 207
+S+ F AP+LGL +S S LG
Sbjct: 128 VSYLFLAPYLGLGSSILSWSWGLG 151
>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
Length = 336
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 315 LDNNNQIHRTILNFFFFFCSLSWPAR-FVRQPL 220
+D+ Q R +L FF+F + W FV +PL
Sbjct: 200 IDSEVQPIRALLQKFFYFWGVEWTYELFVLRPL 232
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 24.2 bits (50), Expect = 6.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 92 NNIKL*PFMYLVYIIYIPD----PFSKFRSNLQIQKINPLTQFLT 214
N + + P I Y PD K +SN IQ+ PL QF+T
Sbjct: 553 NGLPIHPLFKKSKIRYAPDRCEQELQKSKSNSPIQQNVPLQQFIT 597
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 86 FHNNIKL*PFMYLVYIIYIPDPFSKFRSNLQIQKINP 196
FH+NI Y ++I PD ++ + + +I KI+P
Sbjct: 182 FHDNIYAVISGYKRFVIISPDHANQLKLSGKISKIHP 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,105
Number of Sequences: 5004
Number of extensions: 26948
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -