Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1779X
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0282 - 2088302-2089081                                           29   1.5  
11_01_0273 - 2048527-2049297                                           29   1.5  
05_06_0038 - 25100851-25101474,25101945-25102058,25102151-251024...    27   6.1  
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027     26   8.1  

>12_01_0282 - 2088302-2089081
          Length = 259

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 220 ERLTHKPCRPRKGAKKKKEIK 282
           E L H+P +PR   +KKK+IK
Sbjct: 225 EHLQHRPMKPRVKMRKKKDIK 245


>11_01_0273 - 2048527-2049297
          Length = 256

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 220 ERLTHKPCRPRKGAKKKKEIK 282
           E L H+P +PR   +KKK+IK
Sbjct: 224 EHLQHRPMKPRVKMRKKKDIK 244


>05_06_0038 -
           25100851-25101474,25101945-25102058,25102151-25102441,
           25102552-25102860,25103458-25104186
          Length = 688

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 184 KNKSINTIPNLFERLTHKPCRPRKGAKKKK 273
           K + + + PNL + LT +   P+K +KKKK
Sbjct: 606 KQQRVGSAPNL-DALTKEESNPKKDSKKKK 634


>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
          Length = 178

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 193 SINTIPNLFE-RLTHKPCRPRKGAKKKKEIK 282
           SIN I   +  R+ H+ C+P K  K+ +E+K
Sbjct: 111 SINVIIIKYHSRINHRSCQPSKEEKRGEEVK 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,612,938
Number of Sequences: 37544
Number of extensions: 133305
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)