Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1779X
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z81570-6|CAB04607.2|  725|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AY887911-1|AAX34423.1|  737|Caenorhabditis elegans anion transpo...    27   5.5  
U40415-8|AAP68935.1|  294|Caenorhabditis elegans Aquaporin or aq...    26   7.3  
U40415-7|AAP68934.1|  258|Caenorhabditis elegans Aquaporin or aq...    26   7.3  

>AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical
           protein K02F6.3 protein.
          Length = 839

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 151 FFQIPFQSSNPKNKSINTIPNLFERL 228
           FF++ ++S++   K I++IPNL E+L
Sbjct: 170 FFELEWKSADADKKIIDSIPNLQEKL 195


>Z81570-6|CAB04607.2|  725|Caenorhabditis elegans Hypothetical
           protein K12G11.2 protein.
          Length = 725

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 266 FFAPFLGLHGLCVSLSKRLGIVLMDLFFGFEDWNGIWKKDQV 141
           +F  FL    +CV LS  + I L  + +   D  GIWK  ++
Sbjct: 438 YFGRFLETLPMCV-LSAIIVIALKSMLWKLRDLKGIWKLSKI 478


>Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical
           protein F35H8.6 protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 285 ILNFFFF--FCSLSWPARFVRQPLKKVRNCVNG 193
           ++ FFFF  FC+LS     +R   + +R+ VNG
Sbjct: 486 VIAFFFFVIFCTLSIIYYTIRTVFRTIRSVVNG 518


>AY887911-1|AAX34423.1|  737|Caenorhabditis elegans anion
           transporter SULP-5 protein.
          Length = 737

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 266 FFAPFLGLHGLCVSLSKRLGIVLMDLFFGFEDWNGIWKKDQV 141
           +F  FL    +CV LS  + I L  + +   D  GIWK  ++
Sbjct: 450 YFGRFLETLPMCV-LSAIIVIALKSMLWKLRDLKGIWKLSKI 490


>U40415-8|AAP68935.1|  294|Caenorhabditis elegans Aquaporin or
           aquaglyceroporin relatedprotein 8, isoform b protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 320 HYWIIIIKSTERYLISFFFFAPFLGLHGLCVSL 222
           ++WI I+ +    +I  + +  F+GLHG+  SL
Sbjct: 237 YFWIPIVGALIGSIIGAWIYKIFVGLHGMNESL 269


>U40415-7|AAP68934.1|  258|Caenorhabditis elegans Aquaporin or
           aquaglyceroporin relatedprotein 8, isoform a protein.
          Length = 258

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 320 HYWIIIIKSTERYLISFFFFAPFLGLHGLCVSL 222
           ++WI I+ +    +I  + +  F+GLHG+  SL
Sbjct: 201 YFWIPIVGALIGSIIGAWIYKIFVGLHGMNESL 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,290,480
Number of Sequences: 27780
Number of extensions: 140644
Number of successful extensions: 399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)