Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1774X
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   1.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   9.4  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    24   9.4  

>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -2

Query: 275 FWILNKFASIHINKAMFFILVVTSINRSFRLNFILHILQF*IVQEQNSYLEYIVNFRSPL 96
           F ++     +H+NK    +L   S + SF+L F L  L    V  +  +L YI+N   P+
Sbjct: 103 FSLVIDLVGVHVNK----LLKQASYSSSFKLPFGLRNLLPEAVISKEKHLVYILNSFKPI 158

Query: 95  FYTLL 81
              L+
Sbjct: 159 LLKLV 163


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 245 HINKAMFFILVVTSINRSFRLNFILHILQF*IVQEQNSYLEYIVNF 108
           ++ K   FI   T +  + RL+  L   +   + EQ +Y+EY+++F
Sbjct: 837 YVRKNPLFISEYT-VRETLRLHAALRQSKQRSLSEQYAYVEYVIDF 881


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -2

Query: 200 NRSFRLNFILHILQF*IVQEQNSYLEYIVNFRSPLFYTLLHNFIH 66
           NR+ R +F+LHI     +  ++ Y  ++   R   F+  ++  I+
Sbjct: 189 NRNLREDFLLHISFASSLTNEDEYQNWVSQDRESHFFKTMNEIIN 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,470
Number of Sequences: 5004
Number of extensions: 35871
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)