Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1774X
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0040 + 27891797-27891823,27891934-27892091,27892169-278924...    31   0.57 
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26...    31   0.57 
09_06_0093 - 20808799-20808876,20809960-20810428,20811510-20812666     27   7.0  
04_03_0811 - 19909128-19912214                                         27   9.2  

>11_08_0040 +
           27891797-27891823,27891934-27892091,27892169-27892463,
           27892548-27892607,27892686-27893036
          Length = 296

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 287 SIFDSDGETTFNNMITSVANIPINKNDQLPNKICLDCLRQL 409
           +IFD   ++     ++S+ N+   KND++PN I   C +QL
Sbjct: 79  TIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQL 119


>11_01_0036 +
           268028-268168,268734-268839,268920-269031,269126-269241,
           269321-269399,269476-269614,269689-269747,269924-270218,
           270303-270362,270502-270933
          Length = 512

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 287 SIFDSDGETTFNNMITSVANIPINKNDQLPNKICLDCLRQL 409
           +IFD   ++     ++S+ N+   KND++PN I   C +QL
Sbjct: 268 TIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQLCGKQL 308


>09_06_0093 - 20808799-20808876,20809960-20810428,20811510-20812666
          Length = 567

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 109 LGVHCFTLYFIILSINCRLFYFVD 38
           +G HC+ L F++++I C + + +D
Sbjct: 491 VGAHCYRLVFVVMAIACVVGFGLD 514


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 329 ITSVANIPINKNDQLPNKICLDCLRQ 406
           ++S++  P +K  + P+  CLDC  Q
Sbjct: 641 VSSLSRFPWHKLQRFPDMFCLDCCAQ 666


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,746,546
Number of Sequences: 37544
Number of extensions: 164649
Number of successful extensions: 338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)