Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1774X
         (450 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146760-1|AAI46761.1| 1393|Homo sapiens RAB3 GTPase activating ...    29   7.3  
AL445435-3|CAI15808.1| 1393|Homo sapiens rab3 GTPase-activating ...    29   7.3  
AL117631-1|CAB56022.1|  464|Homo sapiens hypothetical protein pr...    29   7.3  
AF255648-1|AAG44636.1| 1393|Homo sapiens rGAP-iso protein.             29   7.3  
AF004828-1|AAC35881.1| 1393|Homo sapiens rab3-GAP regulatory dom...    29   7.3  
AB020646-1|BAA74862.2| 1393|Homo sapiens KIAA0839 protein protein.     29   7.3  

>BC146760-1|AAI46761.1| 1393|Homo sapiens RAB3 GTPase activating
            protein subunit 2 (non-catalytic) protein.
          Length = 1393

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 242  YG*MRICLKSKKNQRSIFDSDGETTFNNMITSVANIPINKNDQLPNKI 385
            Y  MR  LK+ K   S+FDS G+  F   +TS+  +P  + D  PN I
Sbjct: 1166 YAVMRFSLKTVK-PLSLFDSKGKNAFFKDLTSIQLLPSGEMD--PNFI 1210


>AL445435-3|CAI15808.1| 1393|Homo sapiens rab3 GTPase-activating
            protein, non-catalytic subunit (RAB3-GAP150) protein.
          Length = 1393

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 242  YG*MRICLKSKKNQRSIFDSDGETTFNNMITSVANIPINKNDQLPNKI 385
            Y  MR  LK+ K   S+FDS G+  F   +TS+  +P  + D  PN I
Sbjct: 1166 YAVMRFSLKTVK-PLSLFDSKGKNAFFKDLTSIQLLPSGEMD--PNFI 1210


>AL117631-1|CAB56022.1|  464|Homo sapiens hypothetical protein
           protein.
          Length = 464

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 242 YG*MRICLKSKKNQRSIFDSDGETTFNNMITSVANIPINKNDQLPNKI 385
           Y  MR  LK+ K   S+FDS G+  F   +TS+  +P  + D  PN I
Sbjct: 237 YAVMRFSLKTVK-PLSLFDSKGKNAFFKDLTSIQLLPSGEMD--PNFI 281


>AF255648-1|AAG44636.1| 1393|Homo sapiens rGAP-iso protein.
          Length = 1393

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 242  YG*MRICLKSKKNQRSIFDSDGETTFNNMITSVANIPINKNDQLPNKI 385
            Y  MR  LK+ K   S+FDS G+  F   +TS+  +P  + D  PN I
Sbjct: 1166 YAVMRFSLKTVK-PLSLFDSKGKNAFFKDLTSIQLLPSGEMD--PNFI 1210


>AF004828-1|AAC35881.1| 1393|Homo sapiens rab3-GAP regulatory domain
            protein.
          Length = 1393

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 242  YG*MRICLKSKKNQRSIFDSDGETTFNNMITSVANIPINKNDQLPNKI 385
            Y  MR  LK+ K   S+FDS G+  F   +TS+  +P  + D  PN I
Sbjct: 1166 YAVMRFSLKTVK-PLSLFDSKGKNAFFKDLTSIQLLPSGEMD--PNFI 1210


>AB020646-1|BAA74862.2| 1393|Homo sapiens KIAA0839 protein protein.
          Length = 1393

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +2

Query: 242  YG*MRICLKSKKNQRSIFDSDGETTFNNMITSVANIPINKNDQLPNKI 385
            Y  MR  LK+ K   S+FDS G+  F   +TS+  +P  + D  PN I
Sbjct: 1166 YAVMRFSLKTVK-PLSLFDSKGKNAFFKDLTSIQLLPSGEMD--PNFI 1210


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,695,465
Number of Sequences: 237096
Number of extensions: 1040946
Number of successful extensions: 1473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)