Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1774X
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83221-9|CAB05710.1|  400|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z82095-8|CAB05029.1|  400|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    28   2.7  
Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U00036-16|AAK29860.1|  233|Caenorhabditis elegans Hypothetical p...    27   6.3  
AF143147-1|AAD37862.1|  233|Caenorhabditis elegans R151.8A prote...    27   6.3  

>Z83221-9|CAB05710.1|  400|Caenorhabditis elegans Hypothetical
           protein C49A1.2 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 329 ITSVANIPINKNDQLPNKICLDCLRQLRED 418
           I    +I + +ND++P+KI  DCL   R+D
Sbjct: 327 IVDSKDIELTENDEIPDKIGEDCLPFYRKD 356


>Z82095-8|CAB05029.1|  400|Caenorhabditis elegans Hypothetical
           protein C49A1.2 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 329 ITSVANIPINKNDQLPNKICLDCLRQLRED 418
           I    +I + +ND++P+KI  DCL   R+D
Sbjct: 327 IVDSKDIELTENDEIPDKIGEDCLPFYRKD 356


>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 112 ILGVHCFTLYFIILSINCRLFYFVDHFVLSTFYAFCS 2
           ++G H   + F  + IN  +FYF      ++FY  CS
Sbjct: 10  LVGAHMLLVSFCGILINFYMFYFFLKLQKTSFYVLCS 46


>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 CNHKYKKHCFIDMDRCEFV*NPKRI 281
           C + YK HC+I +D+   + + +RI
Sbjct: 275 CTNNYKNHCYIQVDQSATIPDAQRI 299


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 106 GVHCFTLYFIILSINCRLFYFVDHFVLSTFYAFC 5
           G H +  Y +IL   C  F  +  F ++  YA+C
Sbjct: 401 GQHAYDNYELILLFRCTAFLDIAMFWMNVTYAYC 434


>U00036-16|AAK29860.1|  233|Caenorhabditis elegans Hypothetical
           protein R151.10 protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 281 QRSIFDSDGETTFNNMITSVAN 346
           +RSIFD D +  F N +T + N
Sbjct: 197 ERSIFDPDSDPEFKNRVTVILN 218


>AF143147-1|AAD37862.1|  233|Caenorhabditis elegans R151.8A protein
           protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 281 QRSIFDSDGETTFNNMITSVAN 346
           +RSIFD D +  F N +T + N
Sbjct: 197 ERSIFDPDSDPEFKNRVTVILN 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,682,000
Number of Sequences: 27780
Number of extensions: 190922
Number of successful extensions: 474
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)