Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1771
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-3|AAB37874.1|  216|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z79758-2|CAB02132.1|  199|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U80454-3|AAB37874.1|  216|Caenorhabditis elegans Hypothetical
           protein T16A1.3 protein.
          Length = 216

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -2

Query: 609 KDRYRVLSEISLKQNSLSPLNNIAFYLLLKFKFDNAPKS 493
           K +  ++ ++ L +NS+S +NN+ + L  + KFD  PK+
Sbjct: 92  KSQTLIIDDLVLDRNSIS-INNVEYKLGTENKFDEDPKT 129


>Z79758-2|CAB02132.1|  199|Caenorhabditis elegans Hypothetical
           protein W10D5.2 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 407 LVFSRSPRRSDGNFRDGTILF*YAPELRRL 496
           +VF  SPR++D  F  GT+    AP LRR+
Sbjct: 94  VVFRASPRQADLIFVAGTVTNKMAPALRRI 123


>AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4a protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 173 LCFVSIVCTKVYTDKYFL 226
           +C+++I+C +VYTD YF+
Sbjct: 83  ICYIAIMCVQVYTD-YFV 99


>AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4b protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 173 LCFVSIVCTKVYTDKYFL 226
           +C+++I+C +VYTD YF+
Sbjct: 83  ICYIAIMCVQVYTD-YFV 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,996
Number of Sequences: 27780
Number of extensions: 262235
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)