Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1767
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    75   7e-15
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    29   0.48 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   5.9  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   5.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 33/87 (37%), Positives = 53/87 (60%)
 Frame = +1

Query: 256 LAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQA 435
           LAW+N        +IE+   G A  Q  D ++   +P+K++ F+ N E++YI N+K+LQ 
Sbjct: 9   LAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQ 67

Query: 436 GFKKMGVDKIVPIDKLVKGRFQDNLSF 516
            F K G+DK+V  ++L + + QDNL F
Sbjct: 68  VFLKKGIDKVVDPERLSRCKMQDNLEF 94



 Score = 33.9 bits (74), Expect = 0.022
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 510 EFLQWFKKFFDANYGGAAYDAVA 578
           EF+QW K+F+D  Y G  YDA+A
Sbjct: 93  EFVQWAKRFWDQYYPGGDYDALA 115


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 364 PMKRIKFKTNLEHEYIQNFKILQAGFK 444
           P KR+K KT L+HE+     + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 627 PFGAAEPPCPMGRPSRAPLRHMPHLHS 547
           P    EP  P G PS+ P+  +  LH+
Sbjct: 305 PLTKLEPQPPSGSPSKKPVSELEELHT 331


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 379 KFKTNLEHEYIQNFKILQAGFK 444
           K  TNLE+EY   +KI+Q  FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 381 FDSFHWYTAREQHVHELAIGGTCTQLF 301
           FD   WYT R + +  L+I     QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 359 VYQ*KESNLRQIWNMNIYRTLKYYKLVL 442
           ++Q   S LR I N+N+Y+   + KL++
Sbjct: 654 IFQIHASQLRYIDNLNVYKNWAFRKLLI 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,973
Number of Sequences: 5004
Number of extensions: 61636
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)