Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1766
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191...    97   1e-20
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    94   1e-19
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    29   4.1  
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93...    29   4.1  
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652...    28   5.4  
09_04_0126 + 14874739-14875581                                         27   9.5  
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315     27   9.5  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    27   9.5  

>04_04_1332 +
           32718584-32718706,32718892-32718960,32719069-32719155,
           32719865-32719971,32720066-32720187,32720462-32720535,
           32720833-32720946,32721100-32721213
          Length = 269

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 43/87 (49%), Positives = 59/87 (67%)
 Frame = +1

Query: 256 LAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQA 435
           L+W+N  LQ + AK+EE  +GA  CQ MDM+ PG VPM ++ F    E++ IQN+KILQ 
Sbjct: 25  LSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKVNFDAKTEYDMIQNYKILQD 84

Query: 436 GFKKMGVDKIVPIDKLVKGRFQDNLSF 516
            F K+ + K + ++KLVKGR  DNL F
Sbjct: 85  VFNKLRLSKNIEVNKLVKGRPLDNLEF 111


>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/87 (47%), Positives = 56/87 (64%)
 Frame = +1

Query: 256 LAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQA 435
           LAW+N  LQ   +K+EE  +GA  CQ MD   PG+VPM ++ F    E+E IQN+K+LQ 
Sbjct: 21  LAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVNFDAKTEYEMIQNYKVLQD 80

Query: 436 GFKKMGVDKIVPIDKLVKGRFQDNLSF 516
            F K+ + K + ++KL KGR  DNL F
Sbjct: 81  VFNKLKITKHIEVNKLTKGRPLDNLEF 107


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +1

Query: 283 SNFAKIEEL-CTGAAY---CQFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGF 441
           SN  KI E+ C G      C+F+  L    +P+++I  K   EH   + F  +  GF
Sbjct: 377 SNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKINIKLTSEHCRSECFNFVCTGF 433


>04_01_0085 -
           932461-932464,932656-933002,933387-935041,935084-935882,
           936693-936707
          Length = 939

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -3

Query: 586 FSCATASYAAPP*LASKNF----LNHCKNSNYLGNDPS 485
           F C T S+A+PP L+  +     L+HCK+ + LG+ P+
Sbjct: 374 FDC-TFSFASPPFLSCSSLRFLLLDHCKDKHNLGSAPN 410


>10_02_0192 +
           6517985-6518348,6518647-6518699,6519984-6520021,
           6522332-6522717,6523752-6523822,6524620-6524732,
           6525019-6525337,6525576-6525886,6526493-6527069,
           6530483-6530538,6531643-6532126
          Length = 923

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 524 PLQKLKLSWKRPFTSLSMGTILSTPIF 444
           P+QK K+ W     SL M T+L  PIF
Sbjct: 736 PVQKSKMRWVTRRASLDMLTVLVCPIF 762


>09_04_0126 + 14874739-14875581
          Length = 280

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 271 DCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEY 408
           D L++ FA I E+     Y   MD  FPG V      FK+N +  Y
Sbjct: 20  DNLEAEFAVIREIVDDFPYVA-MDTEFPGVVCRPLGTFKSNADFNY 64


>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
          Length = 678

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 281 SQTLRRSKSCVQVPPIASSWTCCSLA 358
           S T  RS S     P  SSWTC S A
Sbjct: 632 SATASRSASPTSARPATSSWTCTSAA 657


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 278 SSQTLRRSKSCVQVPPIASSWTCCS 352
           S +  R S SC   PPI   WT CS
Sbjct: 166 SRKRKRGSNSCSSDPPINLEWTLCS 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,785,280
Number of Sequences: 37544
Number of extensions: 383736
Number of successful extensions: 1105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)