Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1763
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   105   9e-24
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    33   0.056
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    29   0.53 
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    29   0.92 
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    29   0.92 
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    29   0.92 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    29   0.92 
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    28   1.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.6  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   2.8  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   3.7  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   6.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.5  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   6.5  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  105 bits (251), Expect = 9e-24
 Identities = 47/71 (66%), Positives = 58/71 (81%)
 Frame = +1

Query: 529 FMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRK 708
           F+VRG MR VEFKVV+  P  F IV+ DT+IH +GEPI RE+EE +L  VGYDDIGGCR+
Sbjct: 172 FVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEVGYDDIGGCRR 231

Query: 709 QLAQIKEMVEL 741
           Q+AQI+E+VEL
Sbjct: 232 QMAQIRELVEL 242



 Score =  102 bits (245), Expect = 5e-23
 Identities = 49/103 (47%), Positives = 66/103 (64%)
 Frame = +3

Query: 249 LAKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 428
           + KGKRRK+TV IVL+D+   D   R+             D+V+I PCP +KY +R+ +L
Sbjct: 78  VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137

Query: 429 PIDDSVEGLTGNLFEVYLKPYFMEAYRRSIVTTLHGPRGHARR 557
           P+ D+VEGLTG+LF+VYLKPYF+EAYR      L   RG  R+
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQ 180



 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 33/60 (55%), Positives = 45/60 (75%)
 Frame = +1

Query: 79  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 258
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV+++
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 32.7 bits (71), Expect = 0.056
 Identities = 11/22 (50%), Positives = 19/22 (86%)
 Frame = +1

Query: 676 VGYDDIGGCRKQLAQIKEMVEL 741
           V Y D+GGC++Q+ +++E+VEL
Sbjct: 176 VTYGDVGGCKEQIERLREVVEL 197


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 670 NAVGYDDIGGCRKQLAQIKEMVEL 741
           +AV +  IGG + Q+AQI+++VEL
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVEL 297


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -2

Query: 447 QLNHQLAVCGLV---FHISLKDTERWI 376
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 628 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEL 741
           D +P+    + +      Y DIGG   Q+ +IKE VEL
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVEL 209


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -2

Query: 447 QLNHQLAVCGLV---FHISLKDTERWI 376
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 LMIYRPRSSVAKTDPTVSLSKKQSAMTTQSWH-FHRPKW 217
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 682 YDDIGGCRKQLAQIKEMVEL 741
           Y+ +GG  KQ+ +IKE++EL
Sbjct: 144 YEMVGGLEKQIKEIKEVIEL 163


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 417 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 307
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 53  FLDSNNKF*IKWQIIKALMIYRPRSSVAKTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 226
           F+++N K   KW++  A+    P  S + + PT+S   + + SA TT     +RP  S  
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342

Query: 227 NS 232
            S
Sbjct: 343 RS 344


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 601 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 690
           V PD   + D E I+REEE++A  A   ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 103 PD-DLSTAILRRKDRPNRLIVEEAVSD 180
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 76  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 234
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 327 SEFSHQG--NYRLRARCKRFPCGVCP*QDCVTTEELKL 220
           S F+ +G  ++  R  C+ F CG+CP  D  T  ++ L
Sbjct: 18  SNFTSRGLVHFTDRKVCRSFLCGICP-HDIFTNTKMDL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,279
Number of Sequences: 5004
Number of extensions: 61501
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)