Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1763
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 125 3e-29
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 120 9e-28
08_02_0657 - 19749835-19751942,19753123-19753561 97 1e-20
09_06_0271 + 21959213-21960559 33 0.18
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 33 0.24
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 33 0.24
07_03_0500 - 18798893-18799893,18801616-18801701,18801742-188018... 29 2.9
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602... 29 5.1
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 28 6.8
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 28 9.0
07_03_0501 - 18820554-18821548,18821960-18822182 28 9.0
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 28 9.0
03_01_0092 - 731069-731434,731569-733080 28 9.0
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 28 9.0
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 125 bits (302), Expect = 3e-29
Identities = 55/87 (63%), Positives = 66/87 (75%)
Frame = +3
Query: 249 LAKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 428
L KGK+RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 429 PIDDSVEGLTGNLFEVYLKPYFMEAYR 509
PIDD+VEG+TGNLF+ +LKPYF+EAYR
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYR 151
Score = 118 bits (285), Expect = 4e-27
Identities = 53/71 (74%), Positives = 64/71 (90%)
Frame = +1
Query: 529 FMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRK 708
F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG RK
Sbjct: 159 FLVRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRK 217
Query: 709 QLAQIKEMVEL 741
Q+AQI+E+VEL
Sbjct: 218 QMAQIRELVEL 228
Score = 74.9 bits (176), Expect = 6e-14
Identities = 35/57 (61%), Positives = 43/57 (75%)
Frame = +1
Query: 88 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 258
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLL+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLK 67
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 120 bits (290), Expect = 9e-28
Identities = 53/87 (60%), Positives = 65/87 (74%)
Frame = +3
Query: 249 LAKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 428
L KGK+RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 429 PIDDSVEGLTGNLFEVYLKPYFMEAYR 509
PIDD+VEG+TGNLF+ +LKPYF+EAYR
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYR 151
Score = 118 bits (285), Expect = 4e-27
Identities = 53/71 (74%), Positives = 64/71 (90%)
Frame = +1
Query: 529 FMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRK 708
F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE L+ VGYDD+GG RK
Sbjct: 159 FLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEER-LDEVGYDDVGGVRK 217
Query: 709 QLAQIKEMVEL 741
Q+AQI+E+VEL
Sbjct: 218 QMAQIRELVEL 228
Score = 78.6 bits (185), Expect = 5e-15
Identities = 39/57 (68%), Positives = 44/57 (77%)
Frame = +1
Query: 88 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLR 258
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLL+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 67
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 97.5 bits (232), Expect = 1e-20
Identities = 39/85 (45%), Positives = 58/85 (68%)
Frame = +3
Query: 255 KGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPI 434
+G+RR+E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 70 RGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPF 129
Query: 435 DDSVEGLTGNLFEVYLKPYFMEAYR 509
DDSVEG++G+LFE YLKPYFM+A R
Sbjct: 130 DDSVEGISGDLFEPYLKPYFMDALR 154
Score = 89.0 bits (211), Expect = 3e-18
Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Frame = +1
Query: 529 FMVRGGMRAVEFKVVETDPSPF-CIVAPDTVIHCD-GEPIKREEEEEALNAVGYDDIGGC 702
F+VRG M AVEFKV++T+P+ IVA DT I CD G+P+KRE+EE L+ GYDD+GG
Sbjct: 162 FLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEER-LDGPGYDDVGGV 220
Query: 703 RKQLAQIKEMVEL 741
RKQLAQI+E+VEL
Sbjct: 221 RKQLAQIRELVEL 233
Score = 53.6 bits (123), Expect = 2e-07
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Frame = +1
Query: 109 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLRANAAR 273
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V LR R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 274 K 276
+
Sbjct: 76 E 76
>09_06_0271 + 21959213-21960559
Length = 448
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 676 VGYDDIGGCRKQLAQIKEMVEL 741
V YDDIGGC Q +++E VEL
Sbjct: 187 VAYDDIGGCEAQKREVREAVEL 208
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/22 (50%), Positives = 20/22 (90%)
Frame = +1
Query: 676 VGYDDIGGCRKQLAQIKEMVEL 741
V Y+D+GGC++Q+ +++E+VEL
Sbjct: 165 VTYNDVGGCKEQIEKMREVVEL 186
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/22 (50%), Positives = 20/22 (90%)
Frame = +1
Query: 676 VGYDDIGGCRKQLAQIKEMVEL 741
V Y+D+GGC++Q+ +++E+VEL
Sbjct: 165 VTYNDVGGCKEQIEKMREVVEL 186
>07_03_0500 -
18798893-18799893,18801616-18801701,18801742-18801805,
18802640-18802853
Length = 454
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 157 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARKPFAS 288
++EEA+ DN +A S+ + + G TV+ N R+ FA+
Sbjct: 377 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFAA 420
>02_02_0700 +
13058446-13058790,13059352-13059582,13060083-13060241,
13060483-13060635,13061619-13061702,13061847-13061915,
13062374-13062421,13062487-13062621
Length = 407
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 676 VGYDDIGGCRKQLAQIKEMVEL 741
V Y DIGGC Q +I+E VEL
Sbjct: 112 VTYTDIGGCDIQKQEIREAVEL 133
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 467 IRSILEAVLHGGLPPIHRDDTSWSAGACAPSSSK 568
+ S +E+ H LPP H+ TSW + P+ S+
Sbjct: 594 LNSPVESTSHQSLPPKHQHKTSWGHWSDQPNISE 627
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 592 FCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEL 741
F +++ ++ + +P+ + E Y DIGG Q+ +IKE VEL
Sbjct: 176 FQVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 225
>07_03_0501 - 18820554-18821548,18821960-18822182
Length = 405
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 157 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARKPFAS 288
++EEA+ DN +A S+ + + G TV+ N R+ F +
Sbjct: 328 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFVA 371
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 682 YDDIGGCRKQLAQIKEMVEL 741
YD IGG +Q+ +IKE++EL
Sbjct: 187 YDMIGGLDQQIKEIKEVIEL 206
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 488 VLHGGLPPIHRDDTSWSAGACAPSSSKWSK-QIH 586
V+ PP + DT+ S G SSS+W K ++H
Sbjct: 292 VVRAAPPPQEQHDTAASGGGGGASSSRWPKAEVH 325
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 682 YDDIGGCRKQLAQIKEMVEL 741
YD IGG +Q+ +IKE++EL
Sbjct: 165 YDMIGGLDQQIKEIKEVIEL 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,876,888
Number of Sequences: 37544
Number of extensions: 434645
Number of successful extensions: 1209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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