Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1763
         (742 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    27   0.80 
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    27   0.80 
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    26   1.4  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    26   1.4  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    25   3.2  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   5.7  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    23   7.5  

>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 593 NGDGSVSTTLNS-TARMPPRTMKCRHDGSAVSL 498
           +G+G+ S+  NS   R PP   +CR+ G  + L
Sbjct: 21  DGNGAASSCNNSLNPRTPPNCARCRNHGLKIGL 53


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 593 NGDGSVSTTLNS-TARMPPRTMKCRHDGSAVSL 498
           +G+G+ S+  NS   R PP   +CR+ G  + L
Sbjct: 21  DGNGAASSCNNSLNPRTPPNCARCRNHGLKIGL 53


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 593 NGDGSVSTTLNS-TARMPPRTMKCRHDGSAVSL 498
           +G+G+ S+  NS   R PP   +CR+ G  + L
Sbjct: 21  DGNGASSSCNNSLNPRTPPNCARCRNHGLKIGL 53


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 593 NGDGSVSTTLNS-TARMPPRTMKCRHDGSAVSL 498
           +G+G+ S+  NS   R PP   +CR+ G  + L
Sbjct: 21  DGNGASSSCNNSLNPRTPPNCARCRNHGLKIGL 53


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 450 PQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSS 325
           P L    ++  L+ H  L+     IP+  D H+G  S H SS
Sbjct: 673 PSLKEDNSLLSLIGHFFLQTP---IPNNGDVHQGGDSNHTSS 711


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 110 IYRPRSSVAKTDPTVSLSKKQSAMTTQSW 196
           +Y+  S+V +TD   ++ K++   T + W
Sbjct: 849 VYQRLSAVNRTDTRANIRKQERQATIEQW 877


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 396 KDTERWIPHQKDAHEG 349
           K+T RW+  ++D  EG
Sbjct: 124 KETARWVKFEEDVEEG 139


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,562
Number of Sequences: 2352
Number of extensions: 16768
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)