Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1763
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   125   4e-29
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   125   4e-29
Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   121   6e-28
U88170-1|AAB42248.2|  438|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome re...    30   1.5  
AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome re...    30   1.5  
Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF016440-3|AAB65906.1|  443|Caenorhabditis elegans Proteasome re...    29   4.6  
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   8.0  

>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  125 bits (301), Expect = 4e-29
 Identities = 58/71 (81%), Positives = 63/71 (88%)
 Frame = +1

Query: 529 FMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRK 708
           F V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG RK
Sbjct: 157 FTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRK 216

Query: 709 QLAQIKEMVEL 741
           QLAQIKEMVEL
Sbjct: 217 QLAQIKEMVEL 227



 Score =  109 bits (261), Expect = 3e-24
 Identities = 49/87 (56%), Positives = 66/87 (75%)
 Frame = +3

Query: 249 LAKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 428
           + KGK+R+ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 429 PIDDSVEGLTGNLFEVYLKPYFMEAYR 509
           PIDD++EGLTGNLF+V+L+PYF +AYR
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYR 149



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = +1

Query: 97  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARK 276
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+L+    R+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  125 bits (301), Expect = 4e-29
 Identities = 58/71 (81%), Positives = 63/71 (88%)
 Frame = +1

Query: 529 FMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRK 708
           F V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEEEEALN VGYDD+GG RK
Sbjct: 157 FTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALNEVGYDDLGGVRK 216

Query: 709 QLAQIKEMVEL 741
           QLAQIKEMVEL
Sbjct: 217 QLAQIKEMVEL 227



 Score =  109 bits (261), Expect = 3e-24
 Identities = 49/87 (56%), Positives = 66/87 (75%)
 Frame = +3

Query: 249 LAKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 428
           + KGK+R+ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 429 PIDDSVEGLTGNLFEVYLKPYFMEAYR 509
           PIDD++EGLTGNLF+V+L+PYF +AYR
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYR 149



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 34/60 (56%), Positives = 49/60 (81%)
 Frame = +1

Query: 97  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARK 276
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+L+    R+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72


>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  121 bits (291), Expect = 6e-28
 Identities = 50/87 (57%), Positives = 68/87 (78%)
 Frame = +3

Query: 249 LAKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 428
           + KGK+RKE+V I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 429 PIDDSVEGLTGNLFEVYLKPYFMEAYR 509
           PIDD++EGLTGNLF+V+LKPYF+EAYR
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYR 150



 Score =  118 bits (284), Expect = 4e-27
 Identities = 52/71 (73%), Positives = 63/71 (88%)
 Frame = +1

Query: 529 FMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCRK 708
           F V+  MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEEEE++N +GYDD+GG RK
Sbjct: 158 FTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRK 217

Query: 709 QLAQIKEMVEL 741
           QLAQIKEMVEL
Sbjct: 218 QLAQIKEMVEL 228



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 35/63 (55%), Positives = 49/63 (77%)
 Frame = +1

Query: 97  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLRANAARK 276
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+L+    ++
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 277 PFA 285
             A
Sbjct: 73  SVA 75


>U88170-1|AAB42248.2|  438|Caenorhabditis elegans Hypothetical
           protein C10G11.8 protein.
          Length = 438

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 682 YDDIGGCRKQLAQIKEMVEL 741
           +DDIGGC  Q+ ++KE VEL
Sbjct: 182 FDDIGGCESQIQELKESVEL 201


>Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical
           protein C52E4.4 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 676 VGYDDIGGCRKQLAQIKEMVE 738
           V Y D+GGC+ Q+ +++E+VE
Sbjct: 174 VTYSDVGGCKDQIEKLREVVE 194


>AF024493-9|AAV58871.1|  398|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform b
           protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 634 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEL 741
           +P+  +   E    + Y D+GG  +Q+ +++E+VEL
Sbjct: 125 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVEL 160


>AF024493-8|AAB70326.2|  406|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 4, isoform a
           protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 634 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEL 741
           +P+  +   E    + Y D+GG  +Q+ +++E+VEL
Sbjct: 133 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVEL 168


>Z69904-3|CAA93780.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK20.3 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 577 TDPSPFCIVAPDTVIHCDGEPIKREEEEE--ALNAVGYD 687
           ++P+P   VAP+     + E +  E+EE   A+  +GYD
Sbjct: 153 SNPAPAADVAPEAAAPAEAEALTDEQEENVLAITGMGYD 191


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
           protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 111 IIRAFIICHFIQNLLLESKNYYNFY 37
           ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8   LLLAFVVCLTLFNVLLWSKSNYGFY 32


>AF016440-3|AAB65906.1|  443|Caenorhabditis elegans Proteasome
           regulatory particle,atpase-like protein 2 protein.
          Length = 443

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 616 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVEL 741
           V+  D +P+    + E      Y D+GG  +Q+ +IKE VEL
Sbjct: 165 VLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVEL 206


>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
           protein H19N07.2c protein.
          Length = 1135

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 453 LTGNLFEVYLKPYFMEAYRRSIVTTLHGPRGHARRRVQ 566
           ++G+ FE +   Y +   +  +   +H PR + R RVQ
Sbjct: 862 VSGSRFEPFFDDYMLNTCKGLMTRPVHDPRAYKRYRVQ 899


>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
           protein H19N07.2b protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 453 LTGNLFEVYLKPYFMEAYRRSIVTTLHGPRGHARRRVQ 566
           ++G+ FE +   Y +   +  +   +H PR + R RVQ
Sbjct: 862 VSGSRFEPFFDDYMLNTCKGLMTRPVHDPRAYKRYRVQ 899


>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
           protein H19N07.2a protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 453 LTGNLFEVYLKPYFMEAYRRSIVTTLHGPRGHARRRVQ 566
           ++G+ FE +   Y +   +  +   +H PR + R RVQ
Sbjct: 862 VSGSRFEPFFDDYMLNTCKGLMTRPVHDPRAYKRYRVQ 899


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 76  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 225
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 76  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 225
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,429,736
Number of Sequences: 27780
Number of extensions: 363473
Number of successful extensions: 984
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)